PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G40050.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 340aa    MW: 37259.8 Da    PI: 4.7711
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G40050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-06313336123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y C+ C+k+F++++ L+ H +  H
  OPUNC01G40050.1 313 YACKSCNKTFNTSMGLEAHSKAkH 336
                      89*****************88767 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.341313340IPR007087Zinc finger, C2H2
PROSITE patternPS000280315336IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MISHPMPRPP RNEGKSEERS KSDASTPPPR RCSLPLSKTL AEEHGEERRG GGRRRGHGER  60
DRLRAAHGGD HGILGPGETM KCDPPGEFYY HISQIALEPG ELNENVQVLV EVDGKRILLG  120
TLSVELRPQL SIDLVFEKEF ELLHTSKIYS DESDEEVPLA IPLFPNSDDD KIKEAQNSPS  180
KFTTLKSAAA ASPIPEAIVE ERKKYGKSKA DDDDSDDESD ASGEDESDDD EDMIDKQDSS  240
DDDDGESSDE EETPSNNTKG TNRPVETPLN TPPQKKARLA TPIMDSKAGT GKRSGYAKKR  300
TANNDMSEHS AGYACKSCNK TFNTSMGLEA HSKAKHTATK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411211e-146AK241121.1 Oryza sativa Japonica Group cDNA, clone: J065094J12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694821.11e-109PREDICTED: histone deacetylase HDT2-like
TrEMBLA0A0E0JSJ10.0A0A0E0JSJ1_ORYPU; Uncharacterized protein
STRINGOPUNC01G40050.30.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.13e-07histone deacetylase 2C