PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G39820.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 679aa    MW: 75719.4 Da    PI: 6.4617
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G39820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.6e-1581168197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk++    +++++ + +p +fa+++   +  +  + led  g +W+v+l    ++g+  ++ GWk+Fv ++++ +g+f+vF+ + rs f  +v
  OPUNC01G39820.1  81 FFKIM--VGYFSEN-MDIPHPFARTITDLT--GSNVYLEDAYGLRWRVRL--YLHDGALSFGHGWKNFVLDHDISVGEFLVFRQIARSVF--TV 165
                      66666..5566666.9**********5443..337***************..99999**************************9998999..88 PP

                      EEE CS
               B3  95 kvf 97 
                      ++f
  OPUNC01G39820.1 166 QIF 168
                      877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-2277173IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.0778171IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-1978171IPR015300DNA-binding pseudobarrel domain
CDDcd100173.68E-1779168No hitNo description
PfamPF023623.5E-1281168IPR003340B3 DNA binding domain
SMARTSM010197.6E-1381171IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-11581675IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-14582674IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.714583678IPR003340B3 DNA binding domain
CDDcd100171.67E-9584676No hitNo description
SMARTSM010190.02586678IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MVELIKVPKI EQEEGNADNH GEEKADVHEE KTEKVKRRRK RVSDPQRKKA CVDCTKRCIR  60
VHGMASSSSE KARPIPTLPS FFKIMVGYFS ENMDIPHPFA RTITDLTGSN VYLEDAYGLR  120
WRVRLYLHDG ALSFGHGWKN FVLDHDISVG EFLVFRQIAR SVFTVQIFAI SACERIHLCE  180
RNKRQSRKRK PGRKTGYPAN NQMVKISSKD VVKRRKKQRT DEQRYDLDPR QHCMPVHVCI  240
DSDSELKCSE SSVKELDVAA ADESHAVVPV PTTESNADPS YNAAGMKTTK KLDAIGASSN  300
TKDMTGDADK SEDYPSFSYL DSSNVMAANK QSAHSHQDRP IQLYCELGLE DGNAEADNCE  360
NSTMLENAEL RTPLAMMDLN EVSIDDIFLS ADIYEFDSDF CSPEAFSVEL NTEVLVANGR  420
TPGDCFGMPE TSTCLENRQM SDLPRTSADA GCVAVHGIDI NALPSKELSG IGQDNTCTEI  480
GEAHDDCKEG KDIMHSEGNK IAQKGSVSAH SSAKQDIIQE GPRQIAAETM SRSPKPCELT  540
YARKNSVQPG FLTSVRQYAG NNSKVQESGS TKSCVVLAVA ANNKKFCITV PPPDQTWLEL  600
PRRLPVLPRT KKQARKILIL KDPCMRLWPV LYQCTPKFNG FIAGWADISR ENNLREGDTC  660
EFELCSNSEL SFQVLPNLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13648RRRKRVSDPQRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635300.0AK063530.1 Oryza sativa Japonica Group cDNA clone:001-117-B02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645658.10.0B3 domain-containing protein Os01g0905400
SwissprotQ5N6V00.0Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLA0A0E0JSF70.0A0A0E0JSF7_ORYPU; Uncharacterized protein
STRINGOPUNC01G39820.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.16e-11B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]