PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G38590.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 444aa    MW: 47730.2 Da    PI: 8.8896
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G38590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.18.5e-50621872128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + ++
  OPUNC01G38590.1  62 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRAE 154
                      79***************************.89***************888889***************************************** PP

              NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkktLvfy+g+apkg++++W+m+eyrl
  OPUNC01G38590.1 155 NNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 187
                      *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5561207IPR003441NAC domain
PROSITE profilePS5100555.24661208IPR003441NAC domain
PfamPF023651.6E-2463187IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MHMRRGRAAG GEGEAASAAV VMSRYENNGH AVAAAAAAVA GGGGGGNKAA GEVDGHEDDL  60
VMPGFRFHPT EEELIEFYLR RKVEGKRFNV ELITFLDLYR YDPWELPAMA AIGEKEWFFY  120
VPRDRKYRNG DRPNRVTASG YWKATGADRM IRAENNRPIG LKKTLVFYSG KAPKGVRSSW  180
IMNEYRLPPA DTDRYHKTEI SLCRVYKRTG IDDGHGHVST ARSSAHSRGG AAPVQDNKQG  240
SSSTSTPTPP PTPSKLHLLS SECTSPPAIV TDHAAMAHKA PSPRHQQQQL GHAAKPCGGY  300
LENSSMASAT AAAAGGDHQQ LQQDFAAALY QQYSKNTSGA FASTYSLLNL VNAASMGSSA  360
AAIDELSSLV GHGPPSYINP AGSHNYSQFL HMPTTPSSHQ PTSPLGTTAT TLPMSLAAIS  420
DKIWDWNNPI PEAGGRDYST TGFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-536320819165NO APICAL MERISTEM PROTEIN
1ut4_B1e-536320819165NO APICAL MERISTEM PROTEIN
1ut7_A1e-536320819165NO APICAL MERISTEM PROTEIN
1ut7_B1e-536320819165NO APICAL MERISTEM PROTEIN
4dul_A1e-536320819165NAC domain-containing protein 19
4dul_B1e-536320819165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029020.0AK102902.1 Oryza sativa Japonica Group cDNA clone:J033113D13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631974.10.0NAC domain-containing protein 35
TrEMBLA0A0E0JRZ80.0A0A0E0JRZ8_ORYPU; Uncharacterized protein
STRINGOPUNC01G38590.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-100NAC domain containing protein 35