PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G37140.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 906aa MW: 97650.5 Da PI: 6.1696

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G37140.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00044	709	746	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P++ K s + Lek+++++ Lq OPUNC01G37140.1 709 RQMIQDRIKELREIVPNS-----AKCSIDALLEKTIKHMLFLQ 746 77899**********6.....5999999******99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	5.8E-34	7	196	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	5.74E-4	690	747	No hit	No description
PROSITE profile	PS50888	10.499	696	745	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-4	709	754	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 906 aa Download sequence Send to blast
MAGAAPLRDS LRRLCADVGW SYAVFWRVTR AADSQRLKLV WGDGHNERAA GAPSISGFEA 60 MDLLLKEKAA ALRSGTGRSG GSSGGGEGHA PDGAAGHGQD RVDALVHKAM AQQVHVVGEG 120 VIGQAALTGL HRWIVHDIVD ECEEEDEVLL EMKDQFCAGI QTIAVIPVLP RGVIQLGSTK 180 MVMEEAAFID HVRSLFQQLG SSTAVVPSGS FVQDSIMKTP FHKSLGVPTS SHLEDHAGGA 240 NTYNDDMINH QFRHQKSPAS TIQSFNRVQQ FCAGPSFCCP VTIASRCDLF QPDHGSTFTL 300 NSQSEDNRST ALPKNNVSHS ETSNNAISHA FNPLNEPNIS ISGRRECVSI EQHGSCRNGE 360 MEITKGRTAS SSCTGETNIL NKVNALLSQD CLVDCQTSNA TSMNRKFQTM SIVDNIKLQD 420 GSYAIPNAAF VDSTRYSDCF QSLLGTIQGS SSSNSNAIHV DTSHNAVTGE SNFCPLRDRN 480 AANSSDLPEL LASPIPLELT GGNDLFDVLQ LQQKPSGSNS SEANNRQSMP GSEQAVKSLI 540 GCVDDDFTGL ITEADPDQLL DAIVSKIITG HKQNVDTSAS CSTSVASFDR PLHSDCHLYT 600 TGPSSGPIFC NFASVSPVAI KTEGLAVGSR QSSSSIDKSA GCSQTQESYK SQIRLWVENN 660 HSVGSDSLST GQASDSLSAG QCKRSDEIGK SNRKRSRPGE SARPRPKDRQ MIQDRIKELR 720 EIVPNSAKCS IDALLEKTIK HMLFLQNVAK HADKLKESGE PKIVSHEEGL LLKDNFEGGA 780 TWAFEVGTRS MTCPIIVEDL SPPRQMLVEM LCKERGIFLE IADQIRGLGL TILKGVMEVR 840 KDKIWARFAV EANKDVTRME IFLSLVHLLE PSTGSSILSA GVENTSLPRN SFFPSSIPAT 900 GFSNCL

Sequence ? help Back to Top

Protein Sequence Length: 906 aa Download sequence Send to blast

MAGAAPLRDS LRRLCADVGW SYAVFWRVTR AADSQRLKLV WGDGHNERAA GAPSISGFEA  60
MDLLLKEKAA ALRSGTGRSG GSSGGGEGHA PDGAAGHGQD RVDALVHKAM AQQVHVVGEG  120
VIGQAALTGL HRWIVHDIVD ECEEEDEVLL EMKDQFCAGI QTIAVIPVLP RGVIQLGSTK  180
MVMEEAAFID HVRSLFQQLG SSTAVVPSGS FVQDSIMKTP FHKSLGVPTS SHLEDHAGGA  240
NTYNDDMINH QFRHQKSPAS TIQSFNRVQQ FCAGPSFCCP VTIASRCDLF QPDHGSTFTL  300
NSQSEDNRST ALPKNNVSHS ETSNNAISHA FNPLNEPNIS ISGRRECVSI EQHGSCRNGE  360
MEITKGRTAS SSCTGETNIL NKVNALLSQD CLVDCQTSNA TSMNRKFQTM SIVDNIKLQD  420
GSYAIPNAAF VDSTRYSDCF QSLLGTIQGS SSSNSNAIHV DTSHNAVTGE SNFCPLRDRN  480
AANSSDLPEL LASPIPLELT GGNDLFDVLQ LQQKPSGSNS SEANNRQSMP GSEQAVKSLI  540
GCVDDDFTGL ITEADPDQLL DAIVSKIITG HKQNVDTSAS CSTSVASFDR PLHSDCHLYT  600
TGPSSGPIFC NFASVSPVAI KTEGLAVGSR QSSSSIDKSA GCSQTQESYK SQIRLWVENN  660
HSVGSDSLST GQASDSLSAG QCKRSDEIGK SNRKRSRPGE SARPRPKDRQ MIQDRIKELR  720
EIVPNSAKCS IDALLEKTIK HMLFLQNVAK HADKLKESGE PKIVSHEEGL LLKDNFEGGA  780
TWAFEVGTRS MTCPIIVEDL SPPRQMLVEM LCKERGIFLE IADQIRGLGL TILKGVMEVR  840
KDKIWARFAV EANKDVTRME IFLSLVHLLE PSTGSSILSA GVENTSLPRN SFFPSSIPAT  900
GFSNCL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068033	0.0	AK068033.1 Oryza sativa Japonica Group cDNA clone:J013129B18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619837.1	0.0	transcription factor LHW isoform X4
TrEMBL	A0A0E0JRF3	0.0	A0A0E0JRF3_ORYPU; Uncharacterized protein
STRING	OPUNC01G37140.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16189	13	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	2e-54	conserved peptide upstream open reading frame 7