PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G36990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 288aa    MW: 31814.6 Da    PI: 11.0086
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G36990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07129177147
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      r +W++ Ed+ +  a  + + +   +W+++a+ ++ gRt+ +  +++q +
  OPUNC01G36990.1 129 RRPWSKVEDKVFESALVLCPEDvpdRWALVAAQLP-GRTPQEALEHYQVL 177
                      679********************************.******99999975 PP

2Myb_DNA-binding40.18.5e-13221265347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W+++E+ l++++  ++G g+W+ I+r    +Rt+ q+ s+ qky
  OPUNC01G36990.1 221 PWSEDEHRLFLEGLDRYGRGDWRNISRFSVRTRTPTQVASHAQKY 265
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.141124182IPR017930Myb domain
SuperFamilySSF466893.81E-10127177IPR009057Homeodomain-like
SMARTSM007175.0E-6128180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-5129176IPR009057Homeodomain-like
PfamPF002495.6E-6129176IPR001005SANT/Myb domain
CDDcd001679.08E-6131178No hitNo description
PROSITE profilePS5129418.866214270IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-10215271IPR009057Homeodomain-like
SuperFamilySSF466891.35E-16216270IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-16218269IPR006447Myb domain, plants
SMARTSM007173.3E-10218268IPR001005SANT/Myb domain
CDDcd001672.85E-10221266No hitNo description
PfamPF002492.1E-10221265IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAPPPRTGPH AQNVCVHAAR TERKNPTGFP THRSILSSSP RHPPHARVGR PHPSEIFINS  60
VPTRSRSQPG QQHTAPPTHP PPAHATPSSS LVVVAHRDRP REETETLGGR GRLGMDLYGA  120
AAGGVAVARR PWSKVEDKVF ESALVLCPED VPDRWALVAA QLPGRTPQEA LEHYQVLVAD  180
IDLIMRGAID APGSWDDNTG NDRRRGGGGK PRGEERRRGV PWSEDEHRLF LEGLDRYGRG  240
DWRNISRFSV RTRTPTQVAS HAQKYFIRQA NAGARDSKRK SIHDITTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-15130217986RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2628330.0KM262833.1 Oryza sativa Indica Group cultivar Nagina 22 MYB transcription factor (MYB) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622460.12e-98transcription factor DIVARICATA
SwissprotQ8S9H78e-47DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0E0JRD90.0A0A0E0JRD9_ORYPU; Uncharacterized protein
STRINGOPUNC01G36990.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-43MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]