PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G36990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 288aa MW: 31814.6 Da PI: 11.0086 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.7 | 1.1e-07 | 129 | 177 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 r +W++ Ed+ + a + + + +W+++a+ ++ gRt+ + +++q + OPUNC01G36990.1 129 RRPWSKVEDKVFESALVLCPEDvpdRWALVAAQLP-GRTPQEALEHYQVL 177 679********************************.******99999975 PP | |||||||
2 | Myb_DNA-binding | 40.1 | 8.5e-13 | 221 | 265 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+++E+ l++++ ++G g+W+ I+r +Rt+ q+ s+ qky OPUNC01G36990.1 221 PWSEDEHRLFLEGLDRYGRGDWRNISRFSVRTRTPTQVASHAQKY 265 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 8.141 | 124 | 182 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.81E-10 | 127 | 177 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-6 | 128 | 180 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 129 | 176 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.6E-6 | 129 | 176 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.08E-6 | 131 | 178 | No hit | No description |
PROSITE profile | PS51294 | 18.866 | 214 | 270 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-10 | 215 | 271 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.35E-16 | 216 | 270 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-16 | 218 | 269 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.3E-10 | 218 | 268 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.85E-10 | 221 | 266 | No hit | No description |
Pfam | PF00249 | 2.1E-10 | 221 | 265 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MAPPPRTGPH AQNVCVHAAR TERKNPTGFP THRSILSSSP RHPPHARVGR PHPSEIFINS 60 VPTRSRSQPG QQHTAPPTHP PPAHATPSSS LVVVAHRDRP REETETLGGR GRLGMDLYGA 120 AAGGVAVARR PWSKVEDKVF ESALVLCPED VPDRWALVAA QLPGRTPQEA LEHYQVLVAD 180 IDLIMRGAID APGSWDDNTG NDRRRGGGGK PRGEERRRGV PWSEDEHRLF LEGLDRYGRG 240 DWRNISRFSV RTRTPTQVAS HAQKYFIRQA NAGARDSKRK SIHDITTP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-15 | 130 | 217 | 9 | 86 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM262833 | 0.0 | KM262833.1 Oryza sativa Indica Group cultivar Nagina 22 MYB transcription factor (MYB) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622460.1 | 2e-98 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 8e-47 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0E0JRD9 | 0.0 | A0A0E0JRD9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G36990.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 2e-43 | MYB family protein |
Publications ? help Back to Top | |||
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