PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G36480.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 300aa    MW: 33015.2 Da    PI: 7.6378
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G36480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.48e-093379347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +W++eE + + +a +q   +   +W+ +a++++ ++t  +++++++++
  OPUNC01G36480.1 33 AWSAEENKVFEKALAQVDRDspnRWEMVAAMLP-RKTVIDVVNHYRDL 79
                     7*****************99*************.***********986 PP
2Myb_DNA-binding44.34e-14139183347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++ ++ + k++G g+W+ I+r++ + Rt+ q+ s+ qky
  OPUNC01G36480.1 139 PWTEEEHKSFLMGLKKYGRGDWRNISRYFVTSRTPTQVASHAQKY 183
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.272983IPR017884SANT domain
SMARTSM007171.3E-73082IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-43279IPR009057Homeodomain-like
SuperFamilySSF466892.48E-103387IPR009057Homeodomain-like
PfamPF002491.1E-53379IPR001005SANT/Myb domain
CDDcd001676.72E-73379No hitNo description
PROSITE profilePS5129416.496132188IPR017930Myb domain
SuperFamilySSF466899.66E-18134188IPR009057Homeodomain-like
TIGRFAMsTIGR015577.6E-17135186IPR006447Myb domain, plants
SMARTSM007177.6E-12136186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-11136182IPR009057Homeodomain-like
PfamPF002491.6E-11139183IPR001005SANT/Myb domain
CDDcd001671.43E-10139184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MMAEALREVL PLPYFPGQPC WYLQERRGPG AEAWSAEENK VFEKALAQVD RDSPNRWEMV  60
AAMLPRKTVI DVVNHYRDLE NDVGSIEAGL VPFPHYSSSL SPASGFTLQD WDGNDGGFRR  120
GCCLKRGRAP DQERKKGVPW TEEEHKSFLM GLKKYGRGDW RNISRYFVTS RTPTQVASHA  180
QKYFIRLNSG GKDKRRSSIH DITTVNLPED DASNPSPSPP SVLTTASDQL GSLVDSKPVP  240
PPPSLGAQRH FMSPLPGALG VSHHPYGNVK LEPNASFLAG GGTGPGLDDA ILLQMQCGHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-142799576RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402140.0FJ940214.1 Oryza sativa Japonica Group clone KCS611H03 Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621447.10.0transcription factor DIVARICATA
SwissprotQ8S9H77e-75DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0E0JR620.0A0A0E0JR62_ORYPU; Uncharacterized protein
STRINGOPUNC01G36480.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-79MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]