PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G35700.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 555aa    MW: 60212.7 Da    PI: 7.4365
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G35700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-1490130748
                      HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       Ed++++d+vk++G+  W+ Ia+ ++ gR +kqc++rw+++l
  OPUNC01G35700.1  90 MEDDQIIDLVKKYGPTKWSVIAKALP-GRIGKQCRERWHNHL 130
                      6*************************.*************97 PP
2Myb_DNA-binding60.43.8e-19136179146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WTteE++ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++
  OPUNC01G35700.1 136 KDAWTTEEEQALINAHRIYGNK-WAEIAKVLP-GRTDNSIKNHWNS 179
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-1553123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-75580IPR009057Homeodomain-like
PROSITE profilePS5129419.66469130IPR017930Myb domain
CDDcd001676.82E-1476130No hitNo description
SMARTSM007171.9E-1283132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2290138IPR009057Homeodomain-like
PfamPF002493.6E-1390130IPR001005SANT/Myb domain
SuperFamilySSF466891.31E-27113191IPR009057Homeodomain-like
PROSITE profilePS5129428.34131185IPR017930Myb domain
SMARTSM007175.3E-18135183IPR001005SANT/Myb domain
PfamPF002495.7E-17136179IPR001005SANT/Myb domain
CDDcd001671.21E-14138181No hitNo description
Gene3DG3DSA:1.10.10.601.0E-22139184IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MGAMAMVEQE GCVENRQPLA ASSSSVSDGS SYGGGGLAQM SPPVSSSANS ISGLRTEVQC  60
LHRWQKVLNP ELIKGPWTQE VCHVADFAVM EDDQIIDLVK KYGPTKWSVI AKALPGRIGK  120
QCRERWHNHL NPEIRKDAWT TEEEQALINA HRIYGNKWAE IAKVLPGRTD NSIKNHWNSS  180
LRKKQDMYNT SNNMAVPKLL VHDKFKDKPK LMAMEGHLDL NKAPIINSKD QPGTAHRSNS  240
SGFLSRSSLP TAQPLTSHEA SVVDGSAVTL VAQALESDSV RGKGLEIDSV HEKCLEVNSA  300
PDHTGNSRTI QLEAAPSKGE AELSLKNEAR SLGPLCYQIP NMEDVVPVSS SLFSDHLTVN  360
HTSEHCGDGI LSPAGCTTPP PAKGKLTSQL SVDSILRSAA NSFPGSPSIL KRRKRDKSTP  420
VSASELKISG SNTDRFYTPM GMEPATDTPE SFKTTSFLSL GSVDGSVRSI DVSPQYRARS  480
KRMALTKTVE KQLDFSSDGL DTCGSEILNS PCNNSQSTLS ITGAPKLKEK EHGEHAVQLE  540
NLTKNFAHTT NLDVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-615518439158MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-615518439158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1411416RRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402120.0FJ940212.1 Oryza sativa Japonica Group clone KCS635B12 Myb-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616493.10.0transcription factor MYB3R-2
RefseqXP_015616500.10.0transcription factor MYB3R-2
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0E0JQW00.0A0A0E0JQW0_ORYPU; Uncharacterized protein
STRINGOPUNC01G35700.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-75myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]