PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G34140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WOX | ||||||||
Protein Properties | Length: 334aa MW: 37326.4 Da PI: 7.4477 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.5 | 1.8e-21 | 162 | 222 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ OPUNC01G34140.1 162 RQRWTPTPMQLQILENIFDQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 222 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 102.8 | 2.3e-33 | 161 | 224 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq OPUNC01G34140.1 161 ARQRWTPTPMQLQILENIFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 224 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-18 | 157 | 227 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.143 | 158 | 223 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-14 | 160 | 227 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-19 | 161 | 225 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.0E-19 | 162 | 222 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.57E-14 | 162 | 224 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MYPSLSLRHF PPLLPSPNPP PHLSLPGHRL LLLLLLLLPR CRVLLLLPVV VVAAIGTAPW 60 SGPRGEPGAM EWDKAKASSA AAAGEAVDDR GGGEGLGYVK VMTDEQMEVL RKQISIYATI 120 CEQLVEMHRA LTAQQDSIAG MRLGNLYCDP LMVPGGHKIT ARQRWTPTPM QLQILENIFD 180 QGNGTPSKQK IKEITSELSQ HGQISETNVY NWFQNRRARS KRKQAALPNN NAESEAEADE 240 ESPTDKKPKS DRPLHQNIAM RDHNTERISE MHHFDTEHEQ IRRMMYASND SSSRSSGNLG 300 QMSFYDNVMS NPRIDHFLGK VESPGSFPHM RSVE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 215 | 223 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068585 | 0.0 | AK068585.1 Oryza sativa Japonica Group cDNA clone:J013151P17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644908.1 | 1e-169 | PREDICTED: WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 1e-165 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A0E0JQB2 | 0.0 | A0A0E0JQB2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G34140.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3898 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 5e-69 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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