PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G33800.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 369aa    MW: 40066.8 Da    PI: 6.8585
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G33800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2316.1e-1075132155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse..ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s ykGV +++ +g+++A+++d   +  n+ rk+ + g ++t+e Aa+ ++ a++k++g
  OPUNC01G33800.1  75 SIYKGVARHRGSGKYEAHLWDkEGWnpNQTRKKGRQGAYDTEEAAARTYDLAALKIWG 132
                      57*******************877764443366666*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.02E-1375142IPR016177DNA-binding domain
CDDcd000185.62E-1575142No hitNo description
PfamPF008474.4E-775132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-1276140IPR001471AP2/ERF domain
PROSITE profilePS5103217.58376140IPR001471AP2/ERF domain
SMARTSM003808.5E-1576146IPR001471AP2/ERF domain
PROSITE profilePS5103210.072143199IPR001471AP2/ERF domain
SMARTSM003802.0E-4150205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-7173199IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-5173200IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MVSMRKKRKG AFASAAATTL LSPPRSSSSS TASSCIVPPC TESGEKKNKH RKRAKDGAGD  60
DDGDDVAAAP RRGSSIYKGV ARHRGSGKYE AHLWDKEGWN PNQTRKKGRQ GAYDTEEAAA  120
RTYDLAALKI WGSGHVLNFP IDMYRQERER MQRMTREEYL ATLKRKSSGF SRDTQEEAAR  180
AYDLAAIQFR GGSAVTNFDA RCYHLPPPVC KAEPDLEPPP AAAPSGPEPL LRPKTEPCDW  240
EPPAVCPALR DVDDADHAIA EILPALCMDR ADFEARYPAR RARDADGWSS SDEVAAAASV  300
VDVRGLPDDV DFVDDIESLF DAPCPAAVAP AVERAVQLPV VVAPAASRRA NAAAVSYAIS  360
TLASGHWWY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126091e-110CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646190.21e-137AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0E0JQ540.0A0A0E0JQ54_ORYPU; Uncharacterized protein
STRINGOPUNC01G33800.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.12e-34AP2 family protein