PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G32440.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 389aa    MW: 41380.1 Da    PI: 6.8829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G32440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-052793161254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  OPUNC01G32440.1 279 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 316
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-11277331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.33E-6277321No hitNo description
SMARTSM003530.0035278322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9281324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MADEWWSASQ RSHGTSACSA APPLTADRVS CGWTSPATAA AAAAESTSSI TFQDPSRSSA  60
THHQPLSDAA SSLGDPHMVD WTHAFLSGRS DASFQAVLQD DMAATTRPFR AHPTAADETV  120
MTNPFRDMGV GQGLLLDQAL APYGTAPLHG LSFEHSITTS FGDYQHSASY DAEAAVMQFS  180
QTPRASSLPA ASHMQFLSSG SYQLPFGGAP PLPSQLVLQA MQPKPSCSSN ANTLLAKSNS  240
GSAQQICSSA GRKSVSDSPA AAKRPRIEAP SPLPTFKVRK EKLGDRITAL QQLVSPFGKT  300
DTASVLHEAI EYIKFLHEQV ASLSSPYLKN GNPLQHFQQK GSESTKDTVE AKPDLRSRGL  360
CLVPVASTYT VASETVPEFW HPTFGGTFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126091e-109CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633446.10.0transcription factor bHLH123
TrEMBLA0A0E0JPM50.0A0A0E0JPM5_ORYPU; Uncharacterized protein
STRINGOPUNC01G32440.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-52bHLH family protein