PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G31580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 249aa MW: 26027.3 Da PI: 7.886 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 109.2 | 3.1e-34 | 42 | 157 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf................paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C aCk+lrr+C+++Cv+ap+f ++ +++fa+vh++FGasnv kll++lp r+da+++++yeA+ar+ dPvyG+vg OPUNC01G31580.1 42 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagvggrgRERGAAEFAAVHRVFGASNVAKLLSRLPAALRRDAARTVCYEAQARIADPVYGSVG 135 7*********************************998555559*************************************************** PP DUF260 79 vilklqqqleqlkaelallkee 100 +il+lq+q++ l+ +l++l+++ OPUNC01G31580.1 136 TILALQHQVSLLQGQLSVLESQ 157 ****************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.704 | 41 | 158 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.9E-38 | 42 | 155 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MHAAQPPGNK RRGSGGAAAV ERPASGAGLQ AEEASSAGPG APCGACKFLR RRCVPGCVFA 60 PHFSGCGGSG VGAGVGGRGR ERGAAEFAAV HRVFGASNVA KLLSRLPAAL RRDAARTVCY 120 EAQARIADPV YGSVGTILAL QHQVSLLQGQ LSVLESQLFN LRVALASTHP DTPPQHFVVL 180 QPAHSAASTP NQVVVNYDDL PHAVDFMDAE PAALRGLESL QLSQPLQREE DEGHRDMNLF 240 SDSVGQRQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-33 | 35 | 159 | 4 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-33 | 35 | 159 | 4 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242468 | 0.0 | AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630092.1 | 1e-147 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 5e-46 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A0E0JP96 | 1e-178 | A0A0E0JP96_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G31580.1 | 1e-178 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14085 | 25 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 4e-17 | LOB domain-containing protein 20 |