PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC01G30810.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 587aa MW: 64090.8 Da PI: 8.4322 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 41 | 3.8e-13 | 110 | 148 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +kk CnCk+skClk+YCeCfa+g++C+ C+C++C+N+ + OPUNC01G30810.2 110 KKKCCNCKHSKCLKLYCECFASGVYCDG-CNCSNCFNNVK 148 799*************************.********987 PP | |||||||
2 | TCR | 50.9 | 3e-16 | 194 | 233 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e OPUNC01G30810.2 194 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 233 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.8E-14 | 109 | 149 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.889 | 110 | 234 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.6E-9 | 111 | 146 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 194 | 235 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-12 | 197 | 232 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 587 aa Download sequence Send to blast |
MAAAAAAVSR ALQPRAVPVG FPQPQQLRAH LPVGVPQQLH PRGLPVMRSH HVVHVPLPRP 60 AVAVAVPVPQ VRPAQPQPVP RPPVAVPLKP ESPKPPRARL YDGKDGTPTK KKCCNCKHSK 120 CLKLYCECFA SGVYCDGCNC SNCFNNVKNE TARREAIDAT LERNPDAFRP KIGSSPHANR 180 NNMEVAGDLP LVGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCMDCK NFEGSEERKA 240 LFQGDHKNSI HMQQAANAAV NGAIGAAAFS SPSTSRKRKH IDPSLDHSAK ENGAHRTSHV 300 PQKNGMPSDG PLPINQPVHP PTLGPFKVTY RPLLADIVQP GDVKELCKLL VVVSGNAAKA 360 YAGMTTFIHW ELSHCETGKK AQEDKVVEKE DEIRGKREGE MGGSLASTNH DREENNEDPN 420 NQKASADDPS TGGTHAGKAS LEESKHDCND DQKSNRPMSP GTLALMCDEQ DTMFMTSQNV 480 VPQQAAPVNQ NQSELYAEQE RCVLTEFRDC LHKLVTFGRM KEEKFSMAIK SEVPAHPMQA 540 NGVSRIPYSK EVDVPVVKTF LQTSSRHPAA ENSATGHLDK KPKHENT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-29 | 114 | 242 | 14 | 131 | Protein lin-54 homolog |
5fd3_B | 2e-29 | 114 | 242 | 14 | 131 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK122112 | 0.0 | AK122112.1 Oryza sativa Japonica Group cDNA clone:J033127O09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621699.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Swissprot | Q9SZD1 | 1e-146 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A0E0JP05 | 0.0 | A0A0E0JP05_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G30810.2 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4730 | 36 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-125 | Tesmin/TSO1-like CXC domain-containing protein |