PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G30710.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CAMTA | ||||||||
Protein Properties | Length: 896aa MW: 102115 Da PI: 8.418 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 174.7 | 1.3e-54 | 15 | 133 | 1 | 118 |
CG-1 1 llke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 l++e k+rwlk++e+++iL+n++++ +t++++++p+sg+++L+nr+++ryfr+DGy+w+kkk+gkt+ E+he+LKv++v++l+cyYah+++n+t OPUNC01G30710.2 15 LHQEvKSRWLKPKEVLQILQNHDRFIITHKTPHKPPSGAWFLFNRRVLRYFRNDGYEWRKKKNGKTIAEAHERLKVDNVDALNCYYAHADKNST 108 567889**************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylevk 118 fqrr+yw+L+ ++++iv+vhy++v+ OPUNC01G30710.2 109 FQRRIYWMLDPAYDHIVFVHYRDVQ 133 **********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 77.932 | 12 | 138 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 4.6E-69 | 15 | 133 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.2E-48 | 19 | 132 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.9E-5 | 316 | 402 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 1.19E-13 | 317 | 400 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 5.23E-9 | 492 | 578 | No hit | No description |
Pfam | PF13637 | 3.9E-8 | 524 | 569 | No hit | No description |
SuperFamily | SSF48403 | 7.77E-11 | 526 | 564 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.0E-13 | 526 | 662 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 11.134 | 527 | 568 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 7.77E-11 | 608 | 660 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00015 | 440 | 714 | 736 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0037 | 759 | 781 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.236 | 760 | 789 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.014 | 761 | 780 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 8.7 | 782 | 804 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.096 | 783 | 811 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.088 | 785 | 804 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 896 aa Download sequence Send to blast |
MQQQQQQQGF DTHRLHQEVK SRWLKPKEVL QILQNHDRFI ITHKTPHKPP SGAWFLFNRR 60 VLRYFRNDGY EWRKKKNGKT IAEAHERLKV DNVDALNCYY AHADKNSTFQ RRIYWMLDPA 120 YDHIVFVHYR DVQEGSISVS ALNDSSTSNQ NGSASRAEAQ SSPRLTSELF APCVNSCSPG 180 SAEEVSSQIM AINNETNSGS QPDWIQHCNQ AALRKLKVQL SLEDKEDRDV DAKDIPSNSE 240 PITVYGIQNE EPGTCRNLVD IFNGLEFSKE NHPEETGLPF SSTIDVLKNS DTWLEEDQIE 300 AILQSASMTL TVNQWFNIRE VSPEWSYCSE STKVIIAGDF LRDPSHGSWA ILFGDVKVPA 360 EIVQQGVIRC HTPCLDARKV TMYLIDENDK ACSEARQFEF HNKPTKSVVC ENRKPCREVH 420 ESELHQRPTE SKNELLLLFY YVQLLFNGHV SEQFLKFGLP FPNLEYRRQV SPSEIMKGAS 480 EQLNRESAVN CVMEVLLNSK FEEWLLSKYE QNSEGNHFLP RQYHGVIHTI AALGYNWALK 540 LLLNSGVLVN YRDANGWTAL HWAARFGRYL KLCMLNVNPS IIWRSRLLVC QLLLNLIFSC 600 LVHDKKKKNN REETVVLLLD AGAAAGALSD PTAQDPAAKT PSSVASAYGF KGLSAYLSEA 660 ELTAHLHSLE SKENGGSGDQ ISRVVDRISD TSANAQSGRD DQLALKESLG AIRNAVQAAG 720 RIQTAFRIFS FRKKQQAGLQ SRDNHIISIR EVGAASHGKL EKAALSIQKN FRCWKKRKEF 780 LKIRKDVIKI QARVRAHQQH NKYKELLRSV GILEKVMLRW YRKGVGLRGF HPGAMAMPID 840 EEDEDDIAKV FRKQRVETAL NEAVSRVSSI IDSPVARQQY RRMLEMHQQK KDDNEK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068932 | 0.0 | AK068932.1 Oryza sativa Japonica Group cDNA clone:J023002D02, full insert sequence. | |||
GenBank | AK122110 | 0.0 | AK122110.1 Oryza sativa Japonica Group cDNA clone:J033127H20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649561.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X2 | ||||
TrEMBL | A0A0E0JNZ3 | 0.0 | A0A0E0JNZ3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G30710.2 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9407 | 34 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 4e-98 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |