PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G30540.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 309aa MW: 33767.6 Da PI: 8.6909

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G30540.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.7	1.1e-37	205	259	5	59
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 l+cprC s++tkfCy+nny+++qPr+fCkaC+ryWt+GGalrnvPvG+grrkn+ OPUNC01G30540.1 205 PLPCPRCRSRDTKFCYFNNYNVNQPRHFCKACHRYWTAGGALRNVPVGAGRRKNR 259 689**************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.751	206	260	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-27	206	259	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.4E-31	206	259	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	208	244	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MAPAAGGFKL FGKVIMQCGV SEGTQDKAQG FVVAREKVEP EEEEEEQRVP AAATSAQRAS 60 IKREAADRDE EQRQSGGDAA GQPTQRRLQD SAEARRVRML SHVEMAPAAG GFKLFGKVIM 120 QCGVSEGTQD KAQGFVVARE KVEPEEEEEE QRVPAAATSA QRASIKREAA DRDEEQRQSG 180 GDAAGQPTQR RLQDSAEARA AAAAPLPCPR CRSRDTKFCY FNNYNVNQPR HFCKACHRYW 240 TAGGALRNVP VGAGRRKNRP LGPVAVAHHH HHHHRAAAGF VLGFPNPSSP TSPSPAYTDR 300 WPVTPERPF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630447.1	1e-109	dof zinc finger protein 5
Swissprot	Q5JLR7	1e-111	DOF5_ORYSJ; Dof zinc finger protein 5
TrEMBL	A0A0E0JNX0	0.0	A0A0E0JNX0_ORYPU; Uncharacterized protein
STRING	OPUNC01G30540.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6495	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	4e-33	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]