PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G29620.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 317aa    MW: 33017.7 Da    PI: 4.6522
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G29620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.3e-3095153259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers+ dp++v++tY+ eHnh+
  OPUNC01G29620.1  95 TDSWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSRADPDTVIVTYSFEHNHS 153
                      69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081131.189155IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-3091153IPR003657WRKY domain
SuperFamilySSF1182901.83E-2592153IPR003657WRKY domain
SMARTSM007742.0E-3694154IPR003657WRKY domain
PfamPF031066.6E-2696152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDGEWSDGAV SSPTMSGGGG EQTKAGEGVV DVAAADCLES PVSPSPAAGQ RSGAGAAASP  60
SGRPRRSAQK RVVTVPLADV TGPRPKGVGE GNTPTDSWAW RKYGQKPIKG SPFPRAYYRC  120
SSSKGCPARK QVERSRADPD TVIVTYSFEH NHSATVPRAQ NRQAAPQKPK AQACSPLEPV  180
VEPEETHLAG VTAGPVSGSD GMAAIEVRDE FRWLYDVVSV TTSLTSPSDI DAADEMQLYD  240
QPMFFGGAAV GTAALLPDEF GDVGGLGGEG LGEEEAMFEG LGELPECAMV FRRRAGDRLA  300
MGGGVKIEQS AESTAMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-17961521671WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097700.0AK109770.1 Oryza sativa Japonica Group cDNA clone:002-147-A06, full insert sequence.
GenBankAY8706030.0AY870603.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624912.11e-162probable WRKY transcription factor 65
TrEMBLA0A0E0JNK80.0A0A0E0JNK8_ORYPU; Uncharacterized protein
STRINGOPUNC01G29620.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.25e-37WRKY DNA-binding protein 69