PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G29200.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 700aa    MW: 80278.5 Da    PI: 6.2872
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G29200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-15211051494
                      T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3  14 grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      +rl +p  f+ ++        + + ++s + t+++++g++W v+l  +k +++++lt+GW +Fv++n L+e +f++F++d+++ f  +v
  OPUNC01G29200.1  21 RRLEIPQGFLIHIpevahstsDASLPSSAKGTIQNSEGKTWPVEL--EKLDDHVFLTTGWAKFVEDNSLREYEFLLFRYDENMHF--MV 105
                      46889999998888887777733334888999*************..********************************998888..54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-207116IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-197113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.0558111IPR003340B3 DNA binding domain
CDDcd100173.39E-159108No hitNo description
SMARTSM010191.4E-1111111IPR003340B3 DNA binding domain
PfamPF023627.5E-1321104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MEEEVRRHHH FIKVMVGEFA RRLEIPQGFL IHIPEVAHST SDASLPSSAK GTIQNSEGKT  60
WPVELEKLDD HVFLTTGWAK FVEDNSLREY EFLLFRYDEN MHFMVLPFGL NACEKVIRSS  120
RSPQGKLPCD IFCCTKRARD GDRLTEAANS LTPSHSQVVT LQRTTQGHEL ISSQSFPDQH  180
ELCGSKDGLD EHISLKGPMD DGKANAIAEV MSTLDVDKVT VELFCAMLVF YKWNVDAVAE  240
DFDICRGKPQ IQNLFLKHKL LFQFDIVKRK LRSFFLPDDY CSSPILESRK CSLEEPKLSN  300
QPQQCDLTTE KCSLVDEHDL RIFSQKKRRK RGSFCSPETP RRSPRLACQN NAHDNTEKTL  360
KERSEEQQPS PASTIDQAES RAEQACLCHD KTDNGSLFQD SKKVKPAHGE VDLCEEQTER  420
NAVETSESFT RRDCIESLPA SCEVPARLRI NELCLTRKPA EHVNPLEKVL LDIQRGNFMK  480
TISHVQGIIR NHPSDLLTAD IITVVVQKEI LKWDYCIKDM DAQRIVNALL EHAKKIKEMH  540
NFNSEVRKEE FSAKLKVHLK WQLKEVETAY TSLELDYKKA TSDDNIAFSM LHEQKKKLHN  600
LQDEITGLQQ SLEMKKDEMQ KLAQQVAEHE SVFQKSLMER LRIKEVMKSY EQTLAEVKIQ  660
LTSTEVGSID VEALVKAEMD NMTKEIELSK ESLLNITFKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325329KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2430920.0AK243092.1 Oryza sativa Japonica Group cDNA, clone: J100023B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614209.10.0B3 domain-containing protein Os03g0120900
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0E0JNG00.0A0A0E0JNG0_ORYPU; Uncharacterized protein
STRINGOPUNC01G29200.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.11e-13B3 family protein