PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G29180.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 411aa    MW: 45777.3 Da    PI: 10.5939
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G29180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.29.8e-2121120199
                      EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      ffkvl     + ++rl +p +f++++        ++ ke s+  tle +sgr+W v +  r++ +++++t+GW +Fv+++ L++ +fvvF++dg
  OPUNC01G29180.1  21 FFKVL--VGDF-KQRLKIPPNFCKHIpweesrkaKSLKEASMAATLEGPSGRTWLVVI--RRTAEGTFFTSGWPKFVQDQALRDLEFVVFRYDG 109
                      56666..3444.457********888***999996666799*****************..*********************************9 PP

                      SSEE..EEEEE-S CS
               B3  87 rsefelvvkvfrk 99 
                      +++f  + +vf++
  OPUNC01G29180.1 110 NTRF--TAMVFDR 120
                      9999..6666665 PP
2B350.73.2e-16302388598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++ +v  s ++++p  f ++h   ++e +++ l+d+ g++W+v +i  ++++r  l++GW  F++ n L+egD +vF+l+   ef  +v+vfr
  OPUNC01G29180.1 302 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVLLRDPVGKVWSVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVAAAEF--RVHVFR 388
                      6788999999*********9995..345679***************4.444455..9**********************9986777..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-2116123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-2117125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.95718121IPR003340B3 DNA binding domain
CDDcd100179.61E-1819119No hitNo description
PfamPF023622.1E-1821119IPR003340B3 DNA binding domain
SMARTSM010195.4E-1321121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-20290388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-23292388IPR015300DNA-binding pseudobarrel domain
CDDcd100176.75E-23296388No hitNo description
PROSITE profilePS5086313.592298390IPR003340B3 DNA binding domain
SMARTSM010191.7E-10298390IPR003340B3 DNA binding domain
PfamPF023626.9E-15300388IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MPGAGGKKKS PWASGERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESRK AKSLKEASMA  60
ATLEGPSGRT WLVVIRRTAE GTFFTSGWPK FVQDQALRDL EFVVFRYDGN TRFTAMVFDR  120
TACEREDLMG GGGGGDRPRK KGGRPRTAAS RDAARPKKDS VGKELVTYHA SPSGQPLQIA  180
GSNWTPEPGT TVVKNEEDTD DADELPVCAL PAPPAPASRQ RVSPPRHVPE GALDADGGAA  240
RRGAAKTRSL QDDLALSSIP PSIRRYKGYV SRRRPVTTAE RQRATEIAHA FRSPLPYCVI  300
RMSTMHVYYS FMMRFPTGFS RQHLPRERTD VLLRDPVGKV WSVLYIPNTR DRLSRGWCAF  360
ARGNCLEEGD YCVFELVAAA EFRVHVFRVV EPAVPAVRLR RVTVTCGRGP T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032290.0AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614236.10.0B3 domain-containing protein Os01g0723500
SwissprotQ8S2E60.0Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A0E0JNF80.0A0A0E0JNF8_ORYPU; Uncharacterized protein
STRINGOPUNC01G29180.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.16e-14related to vernalization1 1