PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G28880.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 312aa    MW: 35008 Da    PI: 7.3531
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G28880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.41.2e-1064160186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrt.......sessstcpyfd 83 
                      +W+++ + aL++a  ++  r +r++l++  W evs+      ++ +   s  qC+++++ l+k+y+k+ke+ +  +        +s s++ yfd
  OPUNC01G28880.1  64 EWSEDSTFALLDAWGDRFVRAGRRSLRADEWLEVSRLAaaaaSRPPGYYSESQCRNRIDTLRKKYRKEKERLRLAArrlsrpdRPSPSKWIYFD 157
                      5**********************************99977764444456999******************988653111111234567888888 PP

         trihelix  84 qle 86 
                      +++
  OPUNC01G28880.1 158 KMQ 160
                      886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.6E-1763162No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDDGAAPAAA EFPSPSPSSS GASPSPRSKR RRTERYAQGF EFAPRPAPAT ATAPAPTPSR  60
GSPEWSEDST FALLDAWGDR FVRAGRRSLR ADEWLEVSRL AAAAASRPPG YYSESQCRNR  120
IDTLRKKYRK EKERLRLAAR RLSRPDRPSP SKWIYFDKMQ SLMCPPPLPL QPPVVTRRRD  180
TQPVPRQSWG LDAAEYVLGG CDNAGTRDSG FDAELGDEEQ PNEAGAGKGK DFDLLVESIR  240
KLGDVYERVE SSKRQHMAEV ERMRRDLQRD LEVRRREILV KAQAEIVRLT EEDGEEGDLK  300
EGEGDDNKSL HD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253264RQHMAEVERMRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623327.11e-155uncharacterized protein LOC4324693
TrEMBLA0A0E0JNB50.0A0A0E0JNB5_ORYPU; Uncharacterized protein
STRINGOPUNC01G28880.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80902224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-26Trihelix family protein