PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC01G28450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 394aa MW: 42710.1 Da PI: 9.6166 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.4 | 1.7e-15 | 174 | 271 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +k+l sdv+++gr+vlpkk ae++ + k ++k l + d+++ + W++k++y ++ks++yvl+ ++ ++v+ ++L+ gD++v++ d+ OPUNC01G28450.1 174 QKELRYSDVSQLGRIVLPKKEAEAYlpiltS--KDGKKSLCMHDLQNaQLWTFKYRYwpNNKSRMYVLE-NTGDYVRTHDLQLGDSIVIYKDD- 263 688899**********************752..446678*****665599*******89999999**99.********************444. PP SEE..EEE CS B3 88 sefelvvk 95 ++ ++v++ OPUNC01G28450.1 264 ENNRFVIG 271 55555665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-17 | 172 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.50E-22 | 172 | 270 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-23 | 172 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.1E-13 | 173 | 276 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.234 | 173 | 276 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-12 | 174 | 271 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010116 | Biological Process | positive regulation of abscisic acid biosynthetic process | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010373 | Biological Process | negative regulation of gibberellin biosynthetic process | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 394 aa Download sequence Send to blast |
MRGEEKWQEQ PAPASHPSRA TSRPRGWPRL GLAPTGVGSS CPPAPASELA RHLARRAPVS 60 ASLPVLPPIK DQGARPPTLA ASAAAAFSPP PLPFPPSAST STSAARPTDM AGVTSKRRSS 120 SASTSSSSGD GDRPRGVTRK RRSGGRCPRP AASLRPAAPR PSSHHTAGLR IILQKELRYS 180 DVSQLGRIVL PKKEAEAYLP ILTSKDGKKS LCMHDLQNAQ LWTFKYRYWP NNKSRMYVLE 240 NTGDYVRTHD LQLGDSIVIY KDDENNRFVI GAKKAGDQQA ATVPQVDEHI STLFPIFPIA 300 QVDDYLSPMA PQVDISAFVP HADENHEIFD GILNSLPEIP VANVRYSDFF DPFDDGMDMA 360 NTLNANANQS ASLHVTDDKS GHSLIPNPKS GPHM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 7e-40 | 169 | 283 | 1 | 114 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 7e-40 | 169 | 283 | 1 | 114 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 137 | 142 | TRKRRS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00382 | DAP | Transfer from AT3G26790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF521182 | 0.0 | EF521182.1 Orayza sativa japonica LFL1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635173.1 | 0.0 | B3 domain-containing protein LFL1 isoform X4 | ||||
Swissprot | A4LBC0 | 0.0 | LFL1_ORYSJ; B3 domain-containing protein LFL1 | ||||
TrEMBL | A0A0E0JN70 | 0.0 | A0A0E0JN70_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G28450.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8091 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G26790.1 | 8e-40 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|