PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G26280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 296aa MW: 31804.4 Da PI: 8.9335 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 75.9 | 9.5e-24 | 18 | 143 | 8 | 126 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevlsk 95 hPtd+elv++yL+++ve+ ++ + ++e+d+y ++P dL k + +++ wyfF++ ++k++ g+r+ ra+ g W++ ++v+ OPUNC01G26280.1 18 HPTDQELVTKYLRRHVESGGNPW-RYVHEADVYAADPDDLTgKyspaVAGDGSRAWYFFTTVRSKSTGGQRRARAVGdGGCWHSEAGARDVVGG 110 9*******************999.88**************84356644444777********************6553899**********986 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmhey 126 + + +g ++ + f +++ p+ +++ W+m e OPUNC01G26280.1 111 irSPRPIGRRQFFSFVTKEGPRRVRSGWIMVEI 143 656777************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 33.622 | 11 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-14 | 15 | 142 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-35 | 15 | 165 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MSPSRPDEAD PVADFGSHPT DQELVTKYLR RHVESGGNPW RYVHEADVYA ADPDDLTGKY 60 SPAVAGDGSR AWYFFTTVRS KSTGGQRRAR AVGDGGCWHS EAGARDVVGG IRSPRPIGRR 120 QFFSFVTKEG PRRVRSGWIM VEIGLKYAQQ NVSSDELVLC KVYRSPRAPP AAAADKSMAA 180 PPPAADKSKT ATPPPDDVKP VVAAAQTPDT KILRAAKEAV AAASAADEAA PGCKRKSDVK 240 SSGARRGKRL CSRCRAETSE SDSETAVLDR SPSIEDETAD SSEIHGSTDA KFIRFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-14 | 15 | 163 | 19 | 166 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621657.1 | 0.0 | NAC domain-containing protein 2 | ||||
TrEMBL | A0A0E0JMC8 | 0.0 | A0A0E0JMC8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G26280.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4011 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 6e-15 | NAC domain containing protein 47 |