PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G26150.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 303aa    MW: 34782.2 Da    PI: 10.6596
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G26150.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.38.9e-16894597
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                     +++ ++++++ l +p++ ++++++k   ++t++l++ +g + ++k+  r  s++ ++++GWkeF +a gLk g++vvFk +++s+   +v v+
  OPUNC01G26150.3  8 MIKLNTTNQDYLHVPRTITQACQLK--DGQTISLMTAHGLKIRIKI--REISNKLYMRRGWKEFIQATGLKMGESVVFKTSSKSKS--HVIVL 94
                     56778889999***********999..5669***************..*******************************6554444..66665 PP
2B335.32.1e-11210301595
                      -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       ++   +k++r+++ k+f +++   + ++++++++++  ++ s ++ l  + +++ry l++GW++F+ an++++g +++F++ + ++ + +v 
  OPUNC01G26150.3 210 AINQTFMKQDRVYFAKEFSKKYiqPLAQRKTVDIQVQIADNPSTSMIL-QKSTDQRYNLKRGWSDFAIANKIQVGTICIFHFYRANQLQATVD 301
                      56778899**************88666667777777777777777777.3566667*************************877677766666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.167497IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-17799IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-4897IPR003340B3 DNA binding domain
PfamPF023629.0E-14891IPR003340B3 DNA binding domain
CDDcd100174.42E-9895No hitNo description
Gene3DG3DSA:2.40.330.101.7E-161497IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-13201295IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-10204299IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.093206303IPR003340B3 DNA binding domain
PfamPF023622.6E-9209301IPR003340B3 DNA binding domain
SMARTSM010191.3212299IPR003340B3 DNA binding domain
CDDcd100171.49E-6216290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDSPRYSMIK LNTTNQDYLH VPRTITQACQ LKDGQTISLM TAHGLKIRIK IREISNKLYM  60
RRGWKEFIQA TGLKMGESVV FKTSSKSKSH VIVLNKQGLS RCPVPYKSSS SHNKNQSSSV  120
ANLSVNRNTP HHMHYNTTEG KSHKAKSHVK QHIQVNLKHH IASTSTVKMS RTIKDMCYCN  180
KGITLSTELK NYIKDIAQFL HHSSKFYIVA INQTFMKQDR VYFAKEFSKK YIQPLAQRKT  240
VDIQVQIADN PSTSMILQKS TDQRYNLKRG WSDFAIANKI QVGTICIFHF YRANQLQATV  300
DVI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JMB30.0A0A0E0JMB3_ORYPU; Uncharacterized protein
TrEMBLA0A0E0JMB50.0A0A0E0JMB5_ORYPU; Uncharacterized protein
STRINGOPUNC01G26150.10.0(Oryza punctata)