PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G26150.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 291aa MW: 33248.4 Da PI: 10.6995

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G26150.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.4	8.2e-16	8	94	5	97
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++ ++++++ l +p++ ++++++k ++t++l++ +g + ++k+ r s++ ++++GWkeF +a gLk g++vvFk +++s+ +v v+ OPUNC01G26150.2 8 MIKLNTTNQDYLHVPRTITQACQLK--DGQTISLMTAHGLKIRIKI--REISNKLYMRRGWKEFIQATGLKMGESVVFKTSSKSKS--HVIVL 94 56778889999*********999..5669***********..*****************************6554444..66665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.167	4	97	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	8.04E-17	7	99	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.9E-4	8	97	IPR003340	B3 DNA binding domain
CDD	cd10017	2.78E-9	8	95	No hit	No description
Pfam	PF02362	8.3E-14	8	91	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.6E-16	14	97	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.65E-9	207	283	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.1E-7	236	287	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	7.711	245	291	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MDSPRYSMIK LNTTNQDYLH VPRTITQACQ LKDGQTISLM TAHGLKIRIK IREISNKLYM 60 RRGWKEFIQA TGLKMGESVV FKTSSKSKSH VIVLNKQGLS RCPVPYKSSS SHNKNQSSSV 120 ANLSVNRNTP HHMHYNTTEG KSHKAKSHVK QHIQVNLKHH IASTSTVKMS RTIKDMCYCN 180 KGITLSTELK NYIKDIAQFL HHSSKFYIVA INQTFMKQDR VPLAQRKTVD IQVQIADNPS 240 TSMILQKSTD QRYNLKRGWS DFAIANKIQV GTICIFHFYR ANQLQATVDV I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0JMB4	0.0	A0A0E0JMB4_ORYPU; Uncharacterized protein
STRING	OPUNC01G26150.1	0.0	(Oryza punctata)