PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G26150.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 322aa    MW: 36946.9 Da    PI: 10.5941
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G26150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11e-1527113597
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +++ ++++++ l +p++ ++++++k   ++t++l++ +g + ++k+  r  s++ ++++GWkeF +a gLk g++vvFk +++s+   +v v+
  OPUNC01G26150.1  27 MIKLNTTNQDYLHVPRTITQACQLK--DGQTISLMTAHGLKIRIKI--REISNKLYMRRGWKEFIQATGLKMGESVVFKTSSKSKS--HVIVL 113
                      56778889999***********999..5669***************..*******************************6554444..66665 PP
2B335.12.3e-11229320595
                      -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       ++   +k++r+++ k+f +++   + ++++++++++  ++ s ++ l  + +++ry l++GW++F+ an++++g +++F++ + ++ + +v 
  OPUNC01G26150.1 229 AINQTFMKQDRVYFAKEFSKKYiqPLAQRKTVDIQVQIADNPSTSMIL-QKSTDQRYNLKRGWSDFAIANKIQVGTICIFHFYRANQLQATVD 320
                      56778899**************88666667777777777777777777.3566667*************************877677766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.16723116IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-1626118IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-1327110IPR003340B3 DNA binding domain
CDDcd100174.21E-927114No hitNo description
SMARTSM010192.9E-427116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-1633116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-13220314IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-10223318IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.093225322IPR003340B3 DNA binding domain
PfamPF023622.9E-9228320IPR003340B3 DNA binding domain
SMARTSM010191.3231318IPR003340B3 DNA binding domain
CDDcd100171.47E-6235309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MLNYVTPLLL PLTFTYLAVM DSPRYSMIKL NTTNQDYLHV PRTITQACQL KDGQTISLMT  60
AHGLKIRIKI REISNKLYMR RGWKEFIQAT GLKMGESVVF KTSSKSKSHV IVLNKQGLSR  120
CPVPYKSSSS HNKNQSSSVA NLSVNRNTPH HMHYNTTEGK SHKAKSHVKQ HIQVNLKHHI  180
ASTSTVKMSR TIKDMCYCNK GITLSTELKN YIKDIAQFLH HSSKFYIVAI NQTFMKQDRV  240
YFAKEFSKKY IQPLAQRKTV DIQVQIADNP STSMILQKST DQRYNLKRGW SDFAIANKIQ  300
VGTICIFHFY RANQLQATVD VI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JMB30.0A0A0E0JMB3_ORYPU; Uncharacterized protein
STRINGOPUNC01G26150.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1825266