PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G26100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 118aa MW: 11845 Da PI: 5.8395 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 37.1 | 6.5e-12 | 77 | 98 | 5 | 26 |
zf-Dof 5 alkcprCdstntkfCyynnysl 26 l+cprC s++tkfCy+nny+ OPUNC01G26100.1 77 PLPCPRCGSRETKFCYFNNYND 98 689*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-7 | 76 | 97 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.2E-9 | 77 | 98 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MANLPSTAAA ADASGFKLFG KVIQPDGQRG VEESAAAQAP PHPPAPPVME AAAGTSQTLQ 60 AAGGGGGGGG GGGGGEPLPC PRCGSRETKF CYFNNYNDSF GGQMDEASNE RDKKRKFG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003223 | 1e-100 | AP003223.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0007F06. | |||
GenBank | AP003264 | 1e-100 | AP003264.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485G01. | |||
GenBank | AP014957 | 1e-100 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619286.1 | 8e-26 | dof zinc finger protein 5-like | ||||
TrEMBL | A0A0E0JMA4 | 2e-78 | A0A0E0JMA4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G26100.1 | 3e-79 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14716 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47655.1 | 8e-09 | Dof family protein |