PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G25730.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 480aa MW: 48745.6 Da PI: 6.6662

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G25730.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.5	1.6e-06	71	89	39	57
S-HHHHHHHHHHHHHHHHC CS Homeobox 39 LterqVkvWFqNrRakekk 57 + +++V++WFqNr+ + k+ OPUNC01G25730.1 71 VGDANVFYWFQNRKSRSKN 89 6789************995 PP
2	Wus_type_Homeobox	42.9	1.2e-14	66	90	40	64
Wus_type_Homeobox 40 eeyGkiedkNVfyWFQNrkaRerqk 64 +eyG+++d+NVfyWFQNrk+R+++k OPUNC01G25730.1 66 SEYGQVGDANVFYWFQNRKSRSKNK 90 79*********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MASSNRHWPS MFRSKHATQP WQTQPDMAGS PPSLLSGSSA GSAGGGGGGG YSGLKSSPFS 60 SGLAASEYGQ VGDANVFYWF QNRKSRSKNK LRSGTGRAAL GLGSNRPCAT APREAVAPSF 120 TPPPILPPQP VQQQQQQLVS PVAAPTSSSS SSSDRSSGSS KPVRATSSQA MSVTAAMDLL 180 SPLAAACEQQ MLYQGQPLES PSAPAPAPAP RVHGIVAPDE PIFLQWPQSP CLSAVDLGAA 240 ILGGQYMHLP VPAAQPPSSP GAGGMFWGLC NDVSAPNNTG HKSCAWSAGL GQHWCGSADQ 300 LGLGKSSAAS IAAGLSRPEE AHDVDATKLG LLQYGFGITT PTVHVDVTSS AAGVLPPVPS 360 SLSPPDATVT VASVAATASL TDFAASAIST GAVANNQLQG LADFGLVAGG SGAGVVCVGV 420 AGAAPPLFYP AAHFNVRHYF GDEAELLRYR GDSRTEPVPV DESGVTVEPL QQGAVYIVLM

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MASSNRHWPS MFRSKHATQP WQTQPDMAGS PPSLLSGSSA GSAGGGGGGG YSGLKSSPFS  60
SGLAASEYGQ VGDANVFYWF QNRKSRSKNK LRSGTGRAAL GLGSNRPCAT APREAVAPSF  120
TPPPILPPQP VQQQQQQLVS PVAAPTSSSS SSSDRSSGSS KPVRATSSQA MSVTAAMDLL  180
SPLAAACEQQ MLYQGQPLES PSAPAPAPAP RVHGIVAPDE PIFLQWPQSP CLSAVDLGAA  240
ILGGQYMHLP VPAAQPPSSP GAGGMFWGLC NDVSAPNNTG HKSCAWSAGL GQHWCGSADQ  300
LGLGKSSAAS IAAGLSRPEE AHDVDATKLG LLQYGFGITT PTVHVDVTSS AAGVLPPVPS  360
SLSPPDATVT VASVAATASL TDFAASAIST GAVANNQLQG LADFGLVAGG SGAGVVCVGV  420
AGAAPPLFYP AAHFNVRHYF GDEAELLRYR GDSRTEPVPV DESGVTVEPL QQGAVYIVLM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025875666.1	0.0	WUSCHEL-related homeobox 7
Swissprot	Q0JKK6	0.0	WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBL	A0A0E0JM59	0.0	A0A0E0JM59_ORYPU; Uncharacterized protein
STRING	OPUNC01G25730.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2666	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	9e-14	homeobox-3