PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G23950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 231aa    MW: 25416.4 Da    PI: 8.7927
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G23950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer92.24.6e-293486258
      ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                     +++rY+eCl+NhAa+ Ggh+vDGCgEfmp+    +t + l CaACgCHR+FHRr+++
  OPUNC01G23950.1 34 TRCRYHECLRNHAAASGGHVVDGCGEFMPA----STEEPLSCAACGCHRSFHRRDPS 86
                     689**************************9....5668****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-282184IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.2E-243684IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.6E-253784IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.8183884IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.5E-26148219IPR009057Homeodomain-like
SuperFamilySSF466895.97E-17151219IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-23159214IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MELSEHDEDV GDVGGGCSSP PTPPHRVLTA TAETRCRYHE CLRNHAAASG GHVVDGCGEF  60
MPASTEEPLS CAACGCHRSF HRRDPSPVRA GAARLLQLHL PASINSRAPP ALLLPPAAAA  120
ASKQGLPFPG YGTPSGGTGT TTASSSEERL RPSPVQPRRR SRTTFTREQK EQMLAFAERV  180
GWRIQRQEEV TVEHFCAQVG VRRQALKVWM HNNKHSFKQR QQQENRQEQQ Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-251592161875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622496.11e-111zinc-finger homeodomain protein 5
RefseqXP_015622497.11e-111zinc-finger homeodomain protein 5
SwissprotA2WSZ61e-113ZHD5_ORYSI; Zinc-finger homeodomain protein 5
TrEMBLA0A0E0JLJ41e-169A0A0E0JLJ4_ORYPU; Uncharacterized protein
STRINGOPUNC01G23950.11e-170(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.24e-38homeobox protein 31