PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G23910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 9927.86 Da PI: 8.9442 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.6 | 3.7e-10 | 11 | 57 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT++ +++ +a + + ++ +W+ +ar+mg ++++++++ ++ OPUNC01G23910.1 11 EWTKQQNKQFERALAVYDTDapdRWHNVARYMGGTKSAEEVRRHYER 57 7*******************************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.349 | 7 | 63 | IPR017884 | SANT domain |
SMART | SM00717 | 5.1E-8 | 8 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.59E-11 | 10 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-8 | 11 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-7 | 11 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 11 | 57 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MASSSKDSSS EWTKQQNKQF ERALAVYDTD APDRWHNVAR YMGGTKSAEE VRRHYERLEV 60 DVERIEAGGV PSSLGYGATP PAGRGGAGRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-19 | 3 | 71 | 2 | 69 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004317 | 1e-106 | AP004317.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0663E10. | |||
GenBank | AP007251 | 1e-106 | AP007251.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, fosmid clone:OSJNOa234E14. | |||
GenBank | AP014957 | 1e-106 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-106 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638756.1 | 7e-45 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 4e-25 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A0E0JLI7 | 2e-59 | A0A0E0JLI7_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G23910.1 | 3e-60 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 3e-24 | RAD-like 6 |