PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G23150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 79aa MW: 9109.05 Da PI: 5.6438 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.3 | 2.7e-11 | 34 | 72 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +T+eE++l + +++ G++ W++Ia +++ gRt++++ +w OPUNC01G23150.1 34 FTEEEEDLVFRMHRLVGNR-WELIAGRIP-GRTAEEIEKFW 72 9******************.*********.*******9999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.065 | 26 | 79 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-8 | 30 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-14 | 33 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.73E-9 | 33 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.44E-9 | 34 | 72 | No hit | No description |
Pfam | PF00249 | 2.1E-10 | 34 | 72 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MESSSGSQLG KNSKTSDSRE TKEVNSTAQN FVHFTEEEED LVFRMHRLVG NRWELIAGRI 60 PGRTAEEIEK FWAIKHQDT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269|PubMed:22168948}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT833447 | 4e-82 | CT833447.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA029N02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644376.1 | 2e-44 | PREDICTED: MYB-like transcription factor ETC3 isoform X1 | ||||
Refseq | XP_006644377.1 | 2e-44 | PREDICTED: MYB-like transcription factor ETC3 isoform X1 | ||||
Refseq | XP_015697875.1 | 2e-44 | PREDICTED: MYB-like transcription factor ETC3 isoform X1 | ||||
Swissprot | B3H4X8 | 3e-21 | TCL2_ARATH; MYB-like transcription factor TCL2 | ||||
TrEMBL | A0A0E0JL99 | 5e-51 | A0A0E0JL99_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G23150.1 | 8e-52 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5275 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01060.1 | 1e-24 | CAPRICE-like MYB3 |
Publications ? help Back to Top | |||
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