PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G22110.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 306aa    MW: 31869.5 Da    PI: 7.8395
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G22110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53e-13133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qk+
  OPUNC01G22110.1 133 PWSEEEHRLFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKF 177
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.100.001338IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.403126182IPR017930Myb domain
SuperFamilySSF466896.73E-17127183IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-17129181IPR006447Myb domain, plants
SMARTSM007178.5E-10130180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-10130173IPR009057Homeodomain-like
CDDcd001672.55E-9133178No hitNo description
PfamPF002491.5E-10133176IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MARKCSHCGN YGHNSRTCSS ASAGHRDTTM LCDGGDGGGG GGCGLRLFGV QVHVAAVGGG  60
GGGGGGGLSM KKSYSMDCLQ LAAAAPGSLV SPSSSSSSSM LLSIDEGLER ASNGYLSDGP  120
HGRIVQERKK GVPWSEEEHR LFLVGLEKLG KGDWRGISRS YVTTRTPTQV ASHAQKFFLR  180
QSSIGKKKRR SSLFDMVPIC ENGARVSEQL SSEGVAASTS LSLMSTPPRH ELSDRAAAID  240
LNSTEEDDTA GAVSSASAAS GRPFFPVVLM EQQQQQASHG HGHHHHCTPL DLELGMSVSS  300
TPSIGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185189KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034320.0AK103432.1 Oryza sativa Japonica Group cDNA clone:J033128P13, full insert sequence.
GenBankCT8342880.0CT834288.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105A23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648805.11e-149transcription factor KUA1
TrEMBLA0A0E0JKW10.0A0A0E0JKW1_ORYPU; Uncharacterized protein
STRINGOPUNC01G22110.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-47MYB_related family protein