PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G19230.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 353aa    MW: 38010.1 Da    PI: 6.0401
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G19230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-161865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++ + ++G g+W+++++  g+ R++k+c++rw +yl
  OPUNC01G19230.1 18 RGLWSPEEDEKLYNHISRYGVGCWSSVPKLAGLERCGKSCRLRWINYL 65
                     788*******************************************97 PP
2Myb_DNA-binding51.13e-1671114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el++ ++k lG++ W+ Ia+ ++ gRt++++k++w++
  OPUNC01G19230.1  71 RGSFSQQEEELIISLHKILGNR-WSQIASQLP-GRTDNEIKNFWNS 114
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-241068IPR009057Homeodomain-like
PROSITE profilePS5129418.9421365IPR017930Myb domain
SuperFamilySSF466891.91E-2915112IPR009057Homeodomain-like
SMARTSM007173.4E-131767IPR001005SANT/Myb domain
PfamPF002499.7E-151865IPR001005SANT/Myb domain
CDDcd001678.45E-122165No hitNo description
PROSITE profilePS5129425.54466120IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-2669120IPR009057Homeodomain-like
SMARTSM007171.6E-1570118IPR001005SANT/Myb domain
PfamPF002491.5E-1471114IPR001005SANT/Myb domain
CDDcd001671.36E-1173113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGREAAAAAC SPKPKLRRGL WSPEEDEKLY NHISRYGVGC WSSVPKLAGL ERCGKSCRLR  60
WINYLRPDLK RGSFSQQEEE LIISLHKILG NRWSQIASQL PGRTDNEIKN FWNSCIKKKL  120
RQRGIDPATH KPLHDGGGDA GAEQQDDVKQ QRLMDDVDDC FAIGGAAGSS DSLAPPHSPA  180
VSFDPLSVTN VPTTMQSSSP YGAAGEHSSF RSDTLCDYGG SGVGSGGVDV VSDAGTYSAY  240
TGGGGDSSSN SNSTAWTCGN VVVGGCEPPL PHMDMFGRVD AEPPPYPPTP FDVSGRFSPW  300
HHHHNHHEPT PPQRLDGGGA ASFPIRSLSR DMPESCFDLG RGALDDEFGV DFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-32141203108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042310.0AP004231.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0026J14.
GenBankAP0042320.0AP004232.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0051H17.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643158.10.0myb-related protein Hv33
TrEMBLA0A0E0JJV70.0A0A0E0JJV7_ORYPU; Uncharacterized protein
STRINGOPUNC01G19230.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111643041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-73myb domain protein 86