PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G17100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 145aa MW: 16334.8 Da PI: 10.2134 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 34.3 | 8e-11 | 36 | 113 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHela 90 +fY++YA+++GF+v+ks+ kk ++ +C++egk+ +++ ++++tgCka +k+ + + +++ +el+HnH+l+ OPUNC01G17100.1 36 NFYKRYAYHAGFDVKKSRAKKA-------FHEVCCTREGKHVSKR----------TSKKTGCKAYVKLMHNFvggvVSSRVMDVVELQHNHSLT 112 6***************998887.......7899******998865..........469************99744223334455679*****98 PP FAR1 91 p 91 p OPUNC01G17100.1 113 P 113 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.0E-6 | 36 | 113 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MATPTPTRVY TQGAGVALHM VPTEGKVFST YDDAYNFYKR YAYHAGFDVK KSRAKKAFHE 60 VCCTREGKHV SKRTSKKTGC KAYVKLMHNF VGGVVSSRVM DVVELQHNHS LTPSPSAVKK 120 MRAHKNRDDT VMQFVDTIQE SHVPL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882211.1 | 7e-60 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0E0JJ50 | 1e-104 | A0A0E0JJ50_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G17100.1 | 1e-105 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7609 | 10 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 4e-12 | FAR1-related sequence 8 |