PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G16830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 227aa MW: 25078.6 Da PI: 6.4011 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 30.3 | 1.2e-09 | 24 | 162 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev..ikev.diykvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknr.atksgyWk..a 85 Gf+ Pt +elv ++L+++++g +++ ++ i d + P dL + +++ + + e ++F++r++ ++ + r++ + g Wk OPUNC01G16830.1 24 TGFQDAPTVDELVLRHLRPRLRGFHCPDGDApvIGVRdDPAAAAPLDLVArhggAADRR-RgEAFYFVRRRRCHRLSVRRTVgGGAGGQWKhsW 116 699999*******************77755442544469*********74334322223.25889999999987754444433455899**555 PP NAM 86 tgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128 tg+ k+v++ + + + fy +g + ++ Wv+ ey++ OPUNC01G16830.1 117 TGSGKSVTELGVVVPWREACYCFYrrdEGGRLSTFGGGWVLAEYEI 162 999*****955555556667889943333344444678******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-23 | 16 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.048 | 22 | 189 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-7 | 24 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGDDPPDDAG EASDLSSSSH SGATGFQDAP TVDELVLRHL RPRLRGFHCP DGDAPVIGVR 60 DDPAAAAPLD LVARHGGAAD RRRGEAFYFV RRRRCHRLSV RRTVGGGAGG QWKHSWTGSG 120 KSVTELGVVV PWREACYCFY RRDEGGRLST FGGGWVLAEY EITEPSTYRR ADEEEDDDEY 180 WVLCHVRKTA SKKRKRNRRD EAVAAWVVAG MESESESESY TGISYAG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002968 | 0.0 | AP002968.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0416G11. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637825.1 | 1e-104 | uncharacterized protein LOC107275546 | ||||
TrEMBL | A0A0E0JJ19 | 1e-163 | A0A0E0JJ19_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G16830.1 | 1e-163 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17372 | 10 | 10 |