PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G13140.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 517aa    MW: 54935.4 Da    PI: 6.8459
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G13140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.92.1e-21102221186
         trihelix   1 rWtkqevlaLiearr............emeerlrrgk.............................lkkplWeevskkmrergferspkqCkek 53 
                      +Wt+ +v++Li+++                      +                             +kk++W++vs++m++ g+ +sp+qC++k
  OPUNC01G13140.1 102 KWTDGMVRLLINVVYsvgddgdgvaasA--------AggkasasaaghgkaggsgshaghgqaaaqQKKGKWKSVSRAMMDSGYMVSPQQCEDK 187
                      6999999999999984444444444440........044445555555555666666666666666**************************** PP

         trihelix  54 wenlnkrykkikegekkr.tsessstcpyfdqle 86 
                      +++lnkryk++ +  +++ +++++++++++d ++
  OPUNC01G13140.1 188 FNDLNKRYKRVVDLLGRGkACKVVENHALLDAMD 221
                      ****************9967************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-17100247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MGPRGVVGSA AMLGLEMHLA HPQMHAAAFQ QPDHHGGGGG GGFQQVPAVR HQQPQPSYYS  60
TGPTPRGIKA PGHDDGMGNG AGKGGVVQQQ PGSAGCPWTR MKWTDGMVRL LINVVYSVGD  120
DGDGVAASAA GGKASASAAG HGKAGGSGSH AGHGQAAAQQ KKGKWKSVSR AMMDSGYMVS  180
PQQCEDKFND LNKRYKRVVD LLGRGKACKV VENHALLDAM DELNPKSKDE ARKLLSSKHL  240
FFREMCAYHN SGAAAAAAAH GPHGAGAAGG GGGPFPRGMK DSSAGPEDDE DDSEDVPSSN  300
DVDDDDDEDD DDDEEVGPGM KSRRIYGGHR VHHHHHHHNG HHKRRRGDDV SSAGAGDDDE  360
EDGVKRARGA ASAAGGGEDE GPSPVQQLQS ELAAAVAGGG DPQQVRQWVR RRAVEVEEQQ  420
VAHEVRAYHL ERQRLKWERF RANKERDMER ARLRNDRLRI DGRRMLLLLR QKDLDFDIAE  480
ANSSSVDHLT SSAPPPLAAL QQQPLGSSPS TAGGHPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2890280.0AK289028.1 Oryza sativa Japonica Group cDNA, clone: J090090M16, full insert sequence.
GenBankAP0034140.0AP003414.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1153F04.
GenBankAP0039210.0AP003921.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028G04.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880854.10.0sarcoplasmic reticulum histidine-rich calcium-binding protein
TrEMBLA0A0E0JHT30.0A0A0E0JHT3_ORYPU; Uncharacterized protein
STRINGOPUNC01G13140.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.17e-44sequence-specific DNA binding transcription factors