PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G12460.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 296aa    MW: 32438.6 Da    PI: 5.717
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G12460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82e-092302632255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yp++e++ +LA+++gL+ +q+ +WF N+R ++
  OPUNC01G12460.1 230 WPYPTEEDKLRLAARTGLDPKQINNWFINQRKRH 263
                      59*****************************885 PP
2ELK33.21.2e-11183204122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK++Ll+KYsg+L+ L++EF+
  OPUNC01G12460.1 183 ELKEMLLKKYSGCLSRLRSEFL 204
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.5E-213781IPR005540KNOX1
PfamPF037908.6E-213979IPR005540KNOX1
SMARTSM012564.4E-2787138IPR005541KNOX2
PfamPF037912.7E-2491137IPR005541KNOX2
SMARTSM011883.6E-6183204IPR005539ELK domain
PROSITE profilePS5121310.423183203IPR005539ELK domain
PfamPF037891.4E-8183204IPR005539ELK domain
PROSITE profilePS5007112.843203266IPR001356Homeobox domain
SMARTSM003891.1E-13205270IPR001356Homeobox domain
SuperFamilySSF466894.15E-19205268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-27208266IPR009057Homeodomain-like
CDDcd000861.14E-13215267No hitNo description
PfamPF059206.2E-17223262IPR008422Homeobox KN domain
PROSITE patternPS000270241264IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEDLYSIHPG ISRVGGAASE ASGVGVGGIG GSSDLTELMK AQIAGHPRYP TLLSAYIECR  60
KVGAPPEVAS LLEEIGRERR AGVGGGCAGE IGVDPELDEF MEAYCRVLVR YKEELSRPFD  120
EAASFLSSIQ MQLSNLCSGA TSPPATATHS DEMVGSSDED QCSGETDMLD IGQEQSSRLA  180
DHELKEMLLK KYSGCLSRLR SEFLKKRKKG KLPKDARSAL LEWWNTHYRW PYPTEEDKLR  240
LAARTGLDPK QINNWFINQR KRHWKPSDGM RFALMEGVAG GSSGTTLYFD TGTIGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198207LRSEFLKKRK
2204208KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288830.0AB028883.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH6, complete cds.
GenBankAK2413120.0AK241312.1 Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644109.10.0PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP290.0KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0E0JHJ60.0A0A0E0JHJ6_ORYPU; Uncharacterized protein
STRINGOPUNC01G12460.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-80KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]