PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G12250.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 292aa    MW: 32515 Da    PI: 5.3768
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G12250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-152572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l+ +v+  G g+W+  ar  g++Rt+k+c++rw++yl
  OPUNC01G12250.1 25 RGPWTVEEDAVLAGYVAANGEGRWNELARAAGLRRTGKSCRLRWLNYL 72
                     89********************************************97 PP
2Myb_DNA-binding513.3e-1678121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg + ++E++l+++++ ++G++ W++Ia++m+ gRt++++k++w++
  OPUNC01G12250.1  78 RGDFNPQEQLLILELHFRWGNR-WSKIAQHMP-GRTDNEIKNYWRT 121
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.4892076IPR017930Myb domain
SuperFamilySSF466892.36E-2923119IPR009057Homeodomain-like
SMARTSM007171.4E-112474IPR001005SANT/Myb domain
PfamPF002491.4E-132572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-212679IPR009057Homeodomain-like
CDDcd001677.17E-82772No hitNo description
SMARTSM007172.1E-1477125IPR001005SANT/Myb domain
PROSITE profilePS5129417.13777127IPR017930Myb domain
PfamPF002493.7E-1578121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2280126IPR009057Homeodomain-like
CDDcd001672.22E-1081121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDAPCGWTSA AAAAVAVAEE EDLRRGPWTV EEDAVLAGYV AANGEGRWNE LARAAGLRRT  60
GKSCRLRWLN YLRPDVRRGD FNPQEQLLIL ELHFRWGNRW SKIAQHMPGR TDNEIKNYWR  120
TRVQKHAKQL GCDVNSRQFK DIMRHLWMPR LVERIQAAAS SERAAPPCAV PVHSDMCHSP  180
DPSTTTTTSS TAGSSSITST SVPHDEQFSS STNRHLTTAS VTTAAAPDWS SEQCGSASAG  240
ISDDMFEGSW SELLARAYND DGADSSLLPD FQMAETVDNW WSLEDIWSQQ PY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-232211924120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630818.11e-158transcription factor MYB2-like
TrEMBLA0A0E0JHH30.0A0A0E0JHH3_ORYPU; Uncharacterized protein
STRINGOPUNC01G12250.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-80myb domain protein 112