PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC01G11080.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 488aa MW: 52698.8 Da PI: 6.1735

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G11080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.4e-38	108	168	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGa+rnvPvG+grr+nk++s OPUNC01G11080.1 108 PDKILPCPRCNSMETKFCYFNNYNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHAS 168 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-32	105	165	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-31	110	166	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.602	112	166	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	114	150	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MAALRQGDDP AIKLFGRTIP LLLANAAAAD DDEVMLNIGN DVKTNNDIPL VPDKLLIVED 60 IPFCSNSSKK NDLQAIGRQD GRMETDFMTE DVTTQPDGSV PEKILKKPDK ILPCPRCNSM 120 ETKFCYFNNY NVHQPRHFCR NCQRYWTAGG AMRNVPVGAG RRRNKHASQY RQAMMTCNNT 180 VAPGDVSDVV HHQAITHGSS LLPATLKENE TATEFISEVP PCKSSASILD IAEPNNTDLV 240 PLASGDNKEE KSCASSVVVS SCSENLMPDN AVMKEPNNRS GCCNAVALPY PAGPALVLPW 300 SLGWNSVAVM AATQCSTQPV LGLKDGIPCP PSWPPQLMVP APGICTSVVP IPLVPPLWSC 360 FPGWPNGMWN AQCPGGNSTT VPSTAPNKIS CSGSSSLVLG KHSREESLQE EEKTRNNLWI 420 PKTLRIDDPA EAAKSSIWVT LGIKPDDKGI FKSFQPNVPK NGTAPESPQA LQANPAAFSR 480 SQSFQETT

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MAALRQGDDP AIKLFGRTIP LLLANAAAAD DDEVMLNIGN DVKTNNDIPL VPDKLLIVED  60
IPFCSNSSKK NDLQAIGRQD GRMETDFMTE DVTTQPDGSV PEKILKKPDK ILPCPRCNSM  120
ETKFCYFNNY NVHQPRHFCR NCQRYWTAGG AMRNVPVGAG RRRNKHASQY RQAMMTCNNT  180
VAPGDVSDVV HHQAITHGSS LLPATLKENE TATEFISEVP PCKSSASILD IAEPNNTDLV  240
PLASGDNKEE KSCASSVVVS SCSENLMPDN AVMKEPNNRS GCCNAVALPY PAGPALVLPW  300
SLGWNSVAVM AATQCSTQPV LGLKDGIPCP PSWPPQLMVP APGICTSVVP IPLVPPLWSC  360
FPGWPNGMWN AQCPGGNSTT VPSTAPNKIS CSGSSSLVLG KHSREESLQE EEKTRNNLWI  420
PKTLRIDDPA EAAKSSIWVT LGIKPDDKGI FKSFQPNVPK NGTAPESPQA LQANPAAFSR  480
SQSFQETT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066984	0.0	AK066984.1 Oryza sativa Japonica Group cDNA clone:J013091E10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635234.1	0.0	cyclic dof factor 2
TrEMBL	A0A0E0JH22	0.0	A0A0E0JH22_ORYPU; Uncharacterized protein
STRING	OPUNC01G11080.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-65	cycling DOF factor 2