PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G10200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 549aa MW: 59681.6 Da PI: 4.7739 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.3 | 9.7e-40 | 162 | 221 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s OPUNC01G10200.1 162 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSS 221 7899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-31 | 148 | 219 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.2E-32 | 164 | 220 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.863 | 166 | 220 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 168 | 204 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MCDKDPGVKL FGRVIPLAPE AEATAAAAAA AAEGSDQPPA PAEVESAAQY EDQHKEIEES 60 KDDQMKVDVP QEKEDNEMKV DAPQEKNDNE VTAEVPEEKG NDEMRVDASE SIESIEPVSR 120 STLDNKKDQG QMNNVEEKSA SDSKEEKTAN DESGQDKVLK KPDKILPCPR CNSMDTKFCY 180 YNNYNVNQPR HFCKNCQRYW TAGGTMRNVP VGAGRRKSKS SSLHYRHSLM APDCMMGSRV 240 EISKSMNPEA FASAHSTPIQ PIGRNETVLK FGPEVPLCES MATVLNIQEQ NGTNAVAVLT 300 GENQEDNSCV SSITSYNTLP ENAVNVDKNS VPVYCNGVGP VPQYYLGAPY MYPWSIGWNN 360 VPMMVPGKSM PESASPSESC STSSAPWMNM NSPMMPVASR LSAPPFPYPL VPPTLWGCLS 420 SWPATAWNIP WIRTNGGCIS PSSSSNSSCS GNGSPLGKHS RDSSLPLKEE KEEKSLWVPK 480 TLRIDDPDEA AKSSIWATLG IKPGDPGIFK PFQSKGESKG QAASESRPAR ALQANPAALS 540 RSQSFQETS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP001383 | 0.0 | AP001383.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0453A06. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618265.1 | 0.0 | cyclic dof factor 2 | ||||
TrEMBL | A0A0E0JGQ8 | 0.0 | A0A0E0JGQ8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G10200.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1434 | 38 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 3e-48 | cycling DOF factor 2 |