PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G08290.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 495aa    MW: 55180.1 Da    PI: 6.8672
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G08290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3413.5e-13163237181
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                      f+k +++s+v +  +l lp  f+++h  k   +++++lede+g   + ++   +++++  l++GW++F+  +++k+gD+vv
  OPUNC01G08290.1 163 FVKYMLHSHVVSGFWLGLPAGFCNKHLPK--HDTEIILEDENGSNHKTNY--LGGKQG--LSAGWRGFAINHNIKVGDVVV 237
                      8999*******************999433..5679***************..888888..9******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-15156241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-18157237IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-20161237No hitNo description
PfamPF023623.1E-11163237IPR003340B3 DNA binding domain
PROSITE profilePS508639.53163260IPR003340B3 DNA binding domain
SMARTSM010191.1E-9163263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MAMDPPIKAS SFSPSFSAAP NPKRGRPPGS KPAKSKMEQK MELVHQRLAL LDSSSGSDRE  60
DDLELRAIVI DCDDDMDDVV EVVPLKILRP KEVDSEQRMV PAVPQTCQNT SNGRTNTTKV  120
PTKGQNKCAS YLPKKSSVQE FCGSAMERAQ EIQTKLQAEH PSFVKYMLHS HVVSGFWLGL  180
PAGFCNKHLP KHDTEIILED ENGSNHKTNY LGGKQGLSAG WRGFAINHNI KVGDVVVHIV  240
RENNISTTDG APGLVSFDAC KKRKISKEAT DNATKPKEDP KTTRVSSKVA HDDTQNLVCE  300
TIDGIRFSDL EMSFDNVMSF SNFNIIVDGL IIDCKFPDHQ RRTYYELCCA QKSFLHNHLL  360
RQLSLTLVVG VIMETINIAE GIRACGAGTS SQEDFLIWKK TLQSFELLGM NVAFLLKRVD  420
DLLSLPDQRM DLSECGKYNE LKLEQSRAGE KVKALESMML TVKDVLKKID AEMEEMESSV  480
RNHDIALRKI ATAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063320.0AK106332.1 Oryza sativa Japonica Group cDNA clone:002-101-F09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623792.10.0B3 domain-containing protein Os01g0234100 isoform X2
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A0E0JG220.0A0A0E0JG22_ORYPU; Uncharacterized protein
STRINGOPUNC01G08290.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-29B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]