PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G07980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 995aa MW: 108831 Da PI: 4.8711 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.6e-18 | 51 | 97 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l OPUNC01G07980.1 51 KGNWTPEEDAILSRAVQTYNGKNWKKIAECFP-DRTDVQCLHRWQKVL 97 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 60.6 | 3.3e-19 | 103 | 149 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l OPUNC01G07980.1 103 KGPWSKEEDDIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWYNHL 149 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 49.1 | 1.3e-15 | 155 | 197 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ lv+a++++G++ W+ + ++ gRt++++k++w+ OPUNC01G07980.1 155 KEAWTQEEEITLVHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 197 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.383 | 46 | 97 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.31E-16 | 47 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-17 | 50 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 51 | 97 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 53 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.26E-14 | 53 | 97 | No hit | No description |
PROSITE profile | PS51294 | 30.712 | 98 | 153 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.59E-30 | 100 | 196 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-18 | 102 | 151 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-17 | 103 | 149 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.63E-15 | 105 | 149 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-25 | 115 | 155 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-14 | 154 | 202 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.65 | 154 | 204 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.7E-14 | 155 | 198 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-21 | 156 | 204 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.97E-11 | 157 | 197 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 995 aa Download sequence Send to blast |
MMTSDNGKAP DKSGESSGPP PAPQEGEIST EPKRRRPLNG RTTGPTRRST KGNWTPEEDA 60 ILSRAVQTYN GKNWKKIAEC FPDRTDVQCL HRWQKVLNPE LVKGPWSKEE DDIIVQMVNK 120 LGPKKWSTIA QALPGRIGKQ CRERWYNHLN PGINKEAWTQ EEEITLVHAH RMYGNKWAEL 180 TKFLPGRTDN SIKNHWNSSV KKKVNSYMSS GLLTQVSCLP LNEYSANCNS SPAMTQQNSE 240 DSGCFVVREV ENSSGCSQSS LAKVSCSQVH DTTVPLGCDL QVNANVDKNE AHDSQSSMGP 300 EACYTSVEAV ASALPAVQSH VSSSNLDPDQ HLQDEFAQGL NLDMTIDEMP SVPSFADNQA 360 VCSIENHERS LEPYDIAMEV PLSMLSSDSG AEQKLHFMSE ADFNSPNCLK SELWQDISLQ 420 NLLSGPDAVE ADSFSRSNHQ PGVYSSEADA HFLAPPYMPQ TSNSSSVLGA ADDQSPQMSV 480 PPSLICSNVM IDDAPFDNRS GRKEMPLSQA EVVTQSSSSS GDAEMFANPG SSNDRHVPSS 540 TMESIPECGD QQVTSAEEPE ASLEKEPSLT QSVTAPDEQD KGALFYEPPR FPSLDVPFVS 600 CDLVTSGDLQ EFSPLGIRQL MHSTMNVCTP MRLWGSPTHD ESTGVLLKSA AKSFICTPSI 660 LKKRHRDLLS PIPDKRIEKK YGTEKDRGVS DTSSTGIKTS CINATKDDAL ITTVLRIERS 720 ASSKSLEKKL VFSDENKENL GYTTEQAKDG QSAGNDEHMD EQTRGERRSA RNVATTYDDL 780 SGNLQPAGIL IEHSCDDPVS PDYGKNTMNQ KLNTNVKSLS VCKEGMCAKS KPTELIVEKS 840 SPCINVDYEY VNILADTPGI KRGLESPSAW KSPWFVDMQF QGSYFASPAD RTYDALGLVK 900 QINVQTAAAL AEAREVLASG GQCDNISSDN ENTGNPDAKK EPGTTKLQTK IMAEGRILDF 960 ECTTPVRSSD KNAGSSLGRY LSSPIPSSHL LKSFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-65 | 51 | 204 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-65 | 51 | 204 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK318601 | 0.0 | AK318601.1 Oryza sativa Japonica Group cDNA, clone: J100066E24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625869.1 | 0.0 | transcription factor MYB3R-1 | ||||
TrEMBL | A0A0E0JFX5 | 0.0 | A0A0E0JFX5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G07980.1 | 0.0 | (Oryza punctata) | ||||
STRING | OPUNC01G08000.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 1e-138 | myb domain protein 3r-4 |