PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G06920.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 593aa    MW: 64585.3 Da    PI: 4.2861
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G06920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.34e-131449439
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                     ++++ r +tf kRrng++K A+ LS+L++a vav+i
  OPUNC01G06920.1 14 NDERERDITFFKRRNGLFKGASDLSILTGASVAVVI 49
                     68899*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-7163IPR002100Transcription factor, MADS-box
CDDcd002662.90E-17670No hitNo description
SuperFamilySSF554556.93E-13771IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.41349IPR002100Transcription factor, MADS-box
PfamPF003192.6E-151453IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MPRRARRTGA AYVNDERERD ITFFKRRNGL FKGASDLSIL TGASVAVVIE DQNRSKFHSV  60
GTPVVQAVVD AALSSDMEAV EPFADEQLKE RLVPLERELA WLKSEAAEKE ETTKTSKARF  120
KKAQKKEENE EEGDSNMKKL FFSKPGKLSS DEVNELYASL VEIKKELQVR LPPLRRRGGK  180
RPIQGSSVPP PPPPPPPPQP QPQLQPPQWP NLFGPHNQLL PVAPPPFIAD QPPPPPPAAG  240
GSLWIPELPP PPVEGSPWAS LLPLRPPRFA GMEPSFLESQ QAPAQDNTQL APLPPIREEA  300
PLLQEPFLFS DQAPALAPLP APLHMPMAET HLPLQAPLLQ EPFLFSDQAP ALAPLPASLQ  360
MPVAETHLPL QAQFIQEPFL FSDQAPPVLA PPPTPLQMPV EAHMPLEAPW IQEPFLMPYQ  420
TPVHAPPPTP LQMPVEADFP LDAPLFQESL IVSDQASVHA PPPAPLQMPM EDHLPPAAEV  480
YNQDLAVKQQ PQEYENYDYM FENVGLSQAQ PAVAGAGDDG FAAMGNDDNP FGYQQLAASP  540
LYDGQIYFGS GVDDMGVPAA DYGGVPEAAL AEVEQASSSG WGIDITGDAG AWF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031040.0AP003104.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0038J17.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636878.10.0pollen-specific leucine-rich repeat extensin-like protein 2
TrEMBLA0A0E0JFI50.0A0A0E0JFI5_ORYPU; Uncharacterized protein
STRINGOPUNC01G06920.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP155501117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-08AGAMOUS-like 62