PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G06180.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 883aa    MW: 95824.5 Da    PI: 6.8261
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G06180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.6e-19563357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OPUNC01G06180.1  5 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 63
                     6789*****************************************************97 PP
2START49.81e-16207286282
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetl 82 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++++l
  OPUNC01G06180.1 207 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSTGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVL 286
                      789*******************************************************.8888888888*********997 PP
3START87.72.5e-2828739499202
                      TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHH CS
            START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksg 188
                      +a+++l+p Rdf+ +Ry+  l +g++v++++S++ +q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l++s+
  OPUNC01G06180.1 287 YAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSTKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESS 380
                      799*************************************999999************************************************ PP

                      HHHHHHHHHHHTXX CS
            START 189 laegaktwvatlqr 202
                      ++ ++k+ +a ++ 
  OPUNC01G06180.1 381 AMVAQKMSMASCKI 394
                      *********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.597164IPR001356Homeobox domain
SMARTSM003896.9E-15268IPR001356Homeobox domain
CDDcd000864.06E-16565No hitNo description
PfamPF000462.3E-16563IPR001356Homeobox domain
SuperFamilySSF466891.15E-16666IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-18763IPR009057Homeodomain-like
CDDcd146864.37E-65796No hitNo description
PROSITE profilePS5084817.13197380IPR002913START domain
Gene3DG3DSA:3.30.530.206.8E-16203373IPR023393START-like domain
SuperFamilySSF559611.35E-30206382No hitNo description
SMARTSM002344.8E-30206398IPR002913START domain
PfamPF018525.5E-39207393IPR002913START domain
PfamPF086705.4E-47735882IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MDASKYVRYT PEQVEALERL YYECPKPSSL RRQQLVRECP ALANVDPKQI KVWFQNRRCR  60
EKQRKESSRL QALNRKLTAM NKLLMEENDR LQKQVSHLVY DNACYRHHHG HGGDPQQVAG  120
MRAHAAFPPQ AAGQLATATD TSCESVVTSG QHQQQHNVVQ PPPPRDASPA GYVTSHHLRH  180
RYDVLAVAAL AYSTPAAFVS WRRLMSIAEE TLTEFLSKAT GTAVEWVQMP GMKPGPDSTG  240
IIAISHGCAG VAARACGLVG MEPAKVAEIL KDRPLWLRDC RSMDVLYAPT TLAPARDFWL  300
LRYTSILDDG SLVVCERSLS TKQGGPSMPL VQPFIRGEML PSGFLIRPSD GGGSVIHIVD  360
HMDLEPWSVP EVVRPLYESS AMVAQKMSMA SCKIQALRYL RQVAHEDTRS VITGWGRQPA  420
ALRALSQKLT RGFNEALNGL ADDGWSVIES DGVDDVCISV NSSKVIGFNA TFSSGLPIVS  480
TGVLCAKASM LLQDVSPPSL LQFLREHRSQ WADSNLDAFF ASAMKPNFCN LPMSRLGGFS  540
DQVILPLAHT FEPEEFLEVI KLGNASNYQD TLVHRDLFLL QMYNGVEESS AGTCSELISA  600
PIDASFSDDS PLLPSGFRII PIDSPLDTSS PNCTLDLAST LEAATPRSRM SGINGGGGGC  660
AAAASSKAVM TIAFQFAFES HLQDSVAAMA RQYMRSITSS VQRIAVELSS SRLVPPGAGA  720
AAAAQLAPAT PEAATLSRWI SQSYRFHFGA ELVKSADASS SNESILKAVW HHANAILCCS  780
LKAMPVFTFA NQSGLDMLET TLVALQDMTL EKVFDDQGRK NLCTELPIIM EQGMACMAGG  840
VCVSSVGRAA SYEKAVAWKV VDGGGGGGGA HCICFMFINW TFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3742070.0AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624690.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0E0JF970.0A0A0E0JF97_ORYPU; Uncharacterized protein
STRINGOPUNC01G06180.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein