PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G05740.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 367aa    MW: 39247.9 Da    PI: 9.8209
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G05740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.9e-15181225347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  OPUNC01G05740.1 181 PWTEEEHRKFLVGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 225
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.686378IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.454174230IPR017930Myb domain
SuperFamilySSF466891.27E-18175231IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-18177229IPR006447Myb domain, plants
SMARTSM007177.0E-12178228IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-11178224IPR009057Homeodomain-like
CDDcd001673.44E-10181226No hitNo description
PfamPF002491.6E-12181225IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAAARQVQLL DAAIATPPHA PSYLNSLEFP LLLLFFFFLL PSNFFFLLFL WFLACAIGGS  60
MARKCSSCGN NGHNSRTCTG QRNLESGAGG GGGGGGGVRL FGVQLHVGGA PLKKCFSMEC  120
LSSSSPSPAY YAAAVAASNS SPTVSSSSSL VSVEEAGEKM ANGYLSDGLM ARAQERKKGV  180
PWTEEEHRKF LVGLEKLGKG DWRGISRHFV TTRTPTQVAS HAQKYFLRQS SLTQKKRRSS  240
LFDVIEDAEK APSVNERLKP RDETASVPAE MGFPALSLGI SSRAKPEAML LPPPSLTLTP  300
SCSSPAVSSS SSFAPPRTIH PSLMVAKPQV QLQLQPPDLE LKISTVHQTD QPGSSPRTSF  360
FGTIRVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0621090.0AK062109.1 Oryza sativa Japonica Group cDNA clone:001-045-B07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625837.11e-161transcription factor MYBS3-like
SwissprotQ7XC575e-50MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A0E0JF400.0A0A0E0JF40_ORYPU; Uncharacterized protein
STRINGOPUNC01G05740.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.16e-49MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]