PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G05680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 482aa MW: 54153.8 Da PI: 7.9771 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.7 | 2e-35 | 95 | 237 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........t 78 lp+G++F+Ptd+el+ e+L++kv+++ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ OPUNC01G05680.1 95 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdvqK 186 799************.99******9996775553333333666646**********.555666799******************7566666443 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l OPUNC01G05680.1 187 GETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 237 3778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-39 | 90 | 256 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.342 | 95 | 256 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-16 | 96 | 237 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MYTSPTLLAF SFALLLLLLL YYLSSLLYSQ LGTRRRPTHA CARSLPDAYE SSMNRGHISS 60 SELIDAKLEE RRISTAKHCP SCGNKLDCKP DWVGLPAGVK FDPTDQELIE HLEAKVREEG 120 SRSHPLIDEF IPTIEGEDGI CYTHPEKLPG VTRDGLSKHF FHRPSKAYTT GTRKRRKIQT 180 ECDVQKGETR WHKTGKTRPV MVNGRQKGCK KILVLYTNFG KHRKPEKTNW VMHQYHLGDL 240 EEEKEGELVV CKIFYQTQPR QCSWSSDRGG ATAAASAVTT TVQQEQRRRD SGSGSCSSTR 300 DHEVSATSYS TGYAVAAAVE MQHLKHAADH FSFAPFRKSF EEVGISGDQV HSNQLGRSEQ 360 QHAGQEQQPH RPLLATTTAV PATAFLISRP TNPVSNIVPP AMQHASVVLD HDQFHVPAIL 420 LHHDKFQQQQ QQKLDRRSAG LEELIMGCTS SSTKGEASIP HSQETEWPYQ PYWTPDNQDH 480 HG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-12 | 93 | 237 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU541472 | 0.0 | EU541472.1 Oryza sativa Japonica Group cultivar Dongjin NAC-type transcription factor (NAC075) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615055.2 | 0.0 | NAC domain-containing protein 75 isoform X3 | ||||
Swissprot | Q9M0F8 | 1e-154 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A0E0JF34 | 0.0 | A0A0E0JF34_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G05680.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-118 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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