PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC01G05180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 251aa MW: 26697 Da PI: 10.2798 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 32.8 | 1.4e-10 | 204 | 232 | 31 | 59 |
T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 31 gCpvkkkversaedpkvveitYegeHnhe 59 +C+vkk+ver aedp++v++tYeg+H h+ OPUNC01G05180.1 204 NCRVKKRVERLAEDPRMVITTYEGRHVHS 232 8***************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.6E-8 | 175 | 203 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.02E-15 | 182 | 233 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.445 | 185 | 234 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.2E-16 | 190 | 233 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-6 | 203 | 231 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.7E-8 | 204 | 232 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MFPSPGRAVM ALGHHGAARQ QATAMAAATT NSAAAAPATV ALAFQQPSPT PPPHHHHHHG 60 ILGYSPLVLD HHPTTTTSSH APSPPTLHHP GLHAAAAAHP PRSSPPHPWS CEEGDRGRQM 120 GKGAAAAMQG MGINDDGNNA GAVSSAAAQR HLGVGAVRMK KAGGGGGGKA RRKVREPRFC 180 FKTMSDVDVL DDGYKWRKYG QKDNCRVKKR VERLAEDPRM VITTYEGRHV HSPSRDDDDA 240 ARASAEMTFI W |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-13 | 181 | 231 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-13 | 181 | 231 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK108755 | 1e-125 | AK108755.1 Oryza sativa Japonica Group cDNA clone:002-150-F11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818604.1 | 8e-73 | probable WRKY transcription factor 13 | ||||
Swissprot | Q9SVB7 | 1e-37 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A0E0JEY0 | 0.0 | A0A0E0JEY0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G05180.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39410.1 | 3e-29 | WRKY DNA-binding protein 13 |