PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G04820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | BES1 | ||||||||
Protein Properties | Length: 137aa MW: 15213 Da PI: 10.6483 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 112.2 | 8.2e-35 | 15 | 126 | 5 | 112 |
DUF822 5 rkptwkEr..EnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspesslq 95 rk+ ++ r + + R RrRR +a++iyaGLRa ++y lpk+aD+n+Vl+ALc+eAG++v+dDG++ r+++++l + + +g s+++ + ss++ OPUNC01G04820.1 15 RKRAARRRwwQRRRGRRRRRRGVATRIYAGLRAGAGYTLPKHADQNDVLRALCAEAGYLVDDDGNVSRRHDERLaGAGAGGGGSSDQLQVSSYS 108 5555555511345556778899****************************************************999999************** PP DUF822 96 .sslkssalaspvesysa 112 + + a++ + ++++ OPUNC01G04820.1 109 gATEAAVAIQHQEQEQEI 126 777777777777666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 4.1E-24 | 18 | 118 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MEGAVPMGQQ LARERKRAAR RRWWQRRRGR RRRRRGVATR IYAGLRAGAG YTLPKHADQN 60 DVLRALCAEA GYLVDDDGNV SRRHDERLAG AGAGGGGSSD QLQVSSYSGA TEAAVAIQHQ 120 EQEQEISLEL TLSFTYM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 4e-13 | 36 | 94 | 391 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 4e-13 | 36 | 94 | 391 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 4e-13 | 36 | 94 | 391 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 4e-13 | 36 | 94 | 391 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 34 | RRRWWQRRRGRRRRRR |
2 | 24 | 30 | QRRRGRR |
3 | 26 | 33 | RRGRRRRR |
4 | 26 | 34 | RRGRRRRRR |
5 | 27 | 34 | RGRRRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002523 | 1e-77 | AP002523.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0013F10. | |||
GenBank | AP014957 | 1e-77 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879038.1 | 1e-57 | BES1/BZR1 homolog protein 4-like | ||||
TrEMBL | A0A0E0JET3 | 5e-93 | A0A0E0JET3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G04820.1 | 9e-94 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13201 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.3 | 1e-14 | BES1 family protein |