PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G04610.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 816aa    MW: 88922.2 Da    PI: 5.7231
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G04610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.2e-075681126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ykt+ C +f  +G C y d C+FaHg
  OPUNC01G04610.1 56 YKTRVCETFVTSGRCMYEDGCTFAHG 81
                     9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-145087IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-95486IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.455583IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-45582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.206141169IPR000571Zinc finger, CCCH-type
SMARTSM003560.42141168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-4144166IPR000571Zinc finger, CCCH-type
SMARTSM007021.5E-20360539IPR006620Prolyl 4-hydroxylase, alpha subunit
SMARTSM007021.5E-20593772IPR006620Prolyl 4-hydroxylase, alpha subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418Molecular FunctionL-ascorbic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MAGRGGMEWE VGRRRDSEDV IVLSPGPPVR RRPPPVKAVE PASGGVAYEP PEKLFYKTRV  60
CETFVTSGRC MYEDGCTFAH GDEELRPSLT ACAGGWRKPS PAAAVAVAPP VAMAPTPTPP  120
PAQVVHADLL ARGSGYGGGH RAITKVCFEF RDKGTCYFGE TCAFPHVSAA EIRQGSRLSL  180
MSSELPARRS VAVTMPRTFV SVPPVAPPPY YRVNNNSGYN AASMAAAAPA AASDANLLAQ  240
QPPEQEGRKM TRLEMLSRKK MTGIYGDWPE GFEREELRTA GEEEESGGGE EGRMGSGIGA  300
LVVLVAAFLT LALPRALASS RRFDLSIAQE NLVHSTGGST ASSSRLVFDP SKSKRLSWHP  360
RIFLYEGFLS DMECDHLVSM GRGNMESSLV ITDGDRNSPY NNIEDIVVSK IEDRISLWSF  420
LPKENGESIQ VLKYGVNRSG SIKEEPKSSS GGHRLATILI YLSDVKQGGE TVFPRSEMKD  480
AQAKEGAPSQ CSGYAVRPAK GNAILLFNLR PDGETDQDSQ YEECPVLEGE KWLAIKHIHL  540
RKFDSPKFSL ASEDACTDED DRCVSWAASG GSTASSSRLV FDPSKSKRLS WHPRIFLYEG  600
FLSDMECDHL VSMGRGNMES SLVITDGDRN SPYNNIEDIV VSKIEDRISL WSFLPKENGE  660
SIQVLKYGVN RSGSIKEEPK SSSGGHRLAT ILIYLSDVKQ GGETVFPRSE MKDAQAKEGA  720
PSQCSGYAVR PAKGNAILLF NLRPDGETDQ DSQYEECPVL EGEKWLAIKH IHLRKFDSPK  780
FSLASEDACT DEDDRCVSWA ASGLSNLILS AYAIVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jij_A3e-3435577324226PROLYL-4 HYDROXYLASE
2jij_B3e-3435577324226PROLYL-4 HYDROXYLASE
2jij_C3e-3435577324226PROLYL-4 HYDROXYLASE
2v4a_A3e-3435577324226PROLYL-4 HYDROXYLASE
2v4a_B3e-3435577324226PROLYL-4 HYDROXYLASE
2v4a_C3e-3435577324226PROLYL-4 HYDROXYLASE
2v4a_D3e-3435577324226PROLYL-4 HYDROXYLASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704840.0AK070484.1 Oryza sativa Japonica Group cDNA clone:J023048G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622130.11e-173probable prolyl 4-hydroxylase 6 isoform X2
TrEMBLA0A0E0JEQ50.0A0A0E0JEQ5_ORYPU; Uncharacterized protein
STRINGOPUNC01G04610.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1354177