PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G03610.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 255aa    MW: 27988.2 Da    PI: 10.1103
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G03610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-1069113554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+e+ErrRR+riN  + +Lr+++P       + ++Ka+ L ++v+ +k+L
  OPUNC01G03610.1  69 HSEAERRRRERINAHLTTLRRMIPDT-----RQMDKATLLARVVDQVKDL 113
                      9************************8.....68***********999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1355122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.74864113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-1368123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-869113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-1170119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.87E-5158218No hitNo description
Gene3DG3DSA:3.30.70.2602.6E-6158219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAECQTLQLQ EGKKVQLLQP YDGGDPSVYR GPILLPRQAS SAPPAVLPEM SSSSGSGRSA  60
TEARALKIHS EAERRRRERI NAHLTTLRRM IPDTRQMDKA TLLARVVDQV KDLKRKASEI  120
TQKTPLPPET NEVTIECFTG DAAVAVAGNH KTLYIKASIT CDDRPDLIAG ITHAFHGLRL  180
RTVRAEMTTL GGRVQHVFIL CKEEGIAGGV SLKSLKEAVR QALAKVTSPE LVHGSSHFQS  240
KRQRILESHC SIMSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277ERRRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8315680.0CT831568.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN107N12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623162.11e-156putative transcription factor bHLH107
TrEMBLA0A0E0JED30.0A0A0E0JED3_ORYPU; Uncharacterized protein
STRINGOPUNC01G03610.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-30bHLH family protein