PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G03540.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-X1
Protein Properties Length: 912aa    MW: 100175 Da    PI: 8.4649
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G03540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.21.3e-06265282118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H+C   CH GpCppC
  OPUNC01G03540.1 265 CGIHRCPVDCHDGPCPPC 282
                      ****************** PP
2zf-NF-X116.51.9e-05425444120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CG+H C + C+eG+C pCp+
  OPUNC01G03540.1 425 CGRHACRRRCCEGDCAPCPE 444
                      ******************96 PP
3zf-NF-X122.22.9e-07452471120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CG+HkC ++CH+G C pCp+
  OPUNC01G03540.1 452 CGNHKCLSPCHRGACAPCPL 471
                      ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.34E-6111169No hitNo description
PROSITE profilePS500899.258112163IPR001841Zinc finger, RING-type
PROSITE patternPS013590112162IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.02212230IPR000967Zinc finger, NF-X1-type
PfamPF014220.038213229IPR000967Zinc finger, NF-X1-type
CDDcd060089.11E-9255303No hitNo description
SMARTSM004380.0011265284IPR000967Zinc finger, NF-X1-type
PfamPF014225.9E-5265282IPR000967Zinc finger, NF-X1-type
CDDcd060081.53E-6308348No hitNo description
PfamPF014221312336IPR000967Zinc finger, NF-X1-type
SMARTSM004380.033318337IPR000967Zinc finger, NF-X1-type
CDDcd060081.21E-8362411No hitNo description
SMARTSM004380.056372392IPR000967Zinc finger, NF-X1-type
PfamPF014220.0031372391IPR000967Zinc finger, NF-X1-type
CDDcd060084.68E-9415463No hitNo description
SMARTSM004380.087425444IPR000967Zinc finger, NF-X1-type
PfamPF014220.0041425443IPR000967Zinc finger, NF-X1-type
CDDcd060081.80E-10442490No hitNo description
SMARTSM004380.0038452471IPR000967Zinc finger, NF-X1-type
PfamPF014224.8E-5452470IPR000967Zinc finger, NF-X1-type
SMARTSM0043837509530IPR000967Zinc finger, NF-X1-type
PfamPF014225.6519529IPR000967Zinc finger, NF-X1-type
PfamPF0142289538547IPR000967Zinc finger, NF-X1-type
SMARTSM00438190620664IPR000967Zinc finger, NF-X1-type
PfamPF014220.36620630IPR000967Zinc finger, NF-X1-type
SMARTSM004380.053674692IPR000967Zinc finger, NF-X1-type
PfamPF014222.1674691IPR000967Zinc finger, NF-X1-type
SMARTSM004380.44737758IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MSFSYAAAAS GSASSSRKPV PVTTAAARRP APSPAAAAAA AAPAPSPSNP SAVSDSDPSS  60
YSSSGEETDL TASDPAAASV ISSYLSVAGD GADLSKVGIF LSSAARRRSS PCLICFDPIR  120
PSDPVWSCSA SCFALLHLHC IQSWAHQSSS AASSPTWGCP KCRFPYPKSQ TPTSYLCFCS  180
KTVDPAPDPW ILPHSCGDVC GRRLNADRDS GCEHNCLLLC HPGPCPPCPA IVPNAMCFCG  240
SHRETRRCSH QRYTCSGKCN KRLGCGIHRC PVDCHDGPCP PCAVRGKHKC ECGETMEERL  300
CSERVFQCKK ECGGMLECRK HSCERGCHAG KCGACPLQGR RTCPCGKKDY PSLDCDAEAA  360
TCGSTCEKVL GCGRHKCPER CHRGLCVETC RLVITKSCRC GGLKKEVPCY QELTCERKCQ  420
RLRNCGRHAC RRRCCEGDCA PCPEVCDKRL RCGNHKCLSP CHRGACAPCP LMKTISCNCG  480
QTFFEVPCGT EKNQKPPKCS KKCNITRLCR HKLESRPHKC HYGACPPCKL ICGEELSCGH  540
RCKLRCHGPI APPNPEFTLK PIKKKKEKHI DCTPGTPCSP CQEVVLMPCF GQHLGQERAI  600
LCSKRRQFPC QNLCGNPLNC GNHYCTKACH VLQIPLSQPE GDQSAIRSLA SVSAFAEPCE  660
ECNLPCQRVR EPPCSHPCPL PCHLSDCPPC KVLVKRPCHC GAMVHAFECM YYNNLNATEQ  720
QKVRSCGGPC HRKLPNCPHL CSEICHPGQC PSVDQCMKKV NVRCACNTLK KEWICQDVLK  780
EYRRSGRDPK QIPKNQYAVG LLACGEDCVR KVKAADSELH LRKIQEIKSP AVEVQNVPKR  840
RKRRNRGQES VESSKFQEIK AVALKFFLVI FLSIIVVAGL YLLWKGVYRL SDWMNEMEEQ  900
RTRQRHLKPG RL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1837843PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667650.0AK066765.1 Oryza sativa Japonica Group cDNA clone:J013082G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621682.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0E0JEB40.0A0A0E0JEB4_ORYPU; Uncharacterized protein
STRINGOPUNC01G03540.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors