PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G03310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 302aa MW: 33447.9 Da PI: 6.4213 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 8.9e-18 | 36 | 80 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE+e+++da ++G + Wk+I +++g ++t q++s+ qky OPUNC01G03310.1 36 RERWSEEEHERFLDALIMYGRD-WKKIEEHVG-TKTTIQIRSHAQKY 80 78******************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.79E-18 | 30 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.769 | 31 | 85 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-9 | 33 | 87 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.7E-18 | 34 | 83 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.3E-12 | 35 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 36 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.88E-10 | 38 | 81 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MGVGLMDRNT NNSSSSSSSE MPGKKARKPY TITKPRERWS EEEHERFLDA LIMYGRDWKK 60 IEEHVGTKTT IQIRSHAQKY FLKVQKMGLA AGLPPQYPRR RLVMQQQQSS PAVSSSVAAT 120 AILHGQPQCL PPLGMPHHKV AVQSSIGWDC PGNLDWASTS GTAAWGNHDG LIQPAAAFDS 180 FPGESSFMGA ASFSNMSMDW TGSTSEMATA SIVQDETIEL PISPDDLQFA QVYKFIGDMF 240 DPDSPCPVET HLQKLKNMDD ITVKTILLVL RNLEDNLLSP QFEPIRRLLS TYDPNQGLSG 300 HL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106969 | 0.0 | AK106969.1 Oryza sativa Japonica Group cDNA clone:002-119-G02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646001.1 | 0.0 | protein REVEILLE 8 | ||||
TrEMBL | A0A0E0JE90 | 0.0 | A0A0E0JE90_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G03310.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 1e-48 | MYB_related family protein |