PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G02390.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 597aa    MW: 65776.9 Da    PI: 9.648
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G02390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.7e-082872346
                     SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46
                     +W++eE +++ +a + l  +  +W+++a  ++ gR++ ++ +++ +
  OPUNC01G02390.1 28 KWSPEENKQFERALAGLDLRcpDWDRVALAIP-GRSALEVMNHFKD 72
                     8*****************99************.**********987 PP
2Myb_DNA-binding46.87e-15143187347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  OPUNC01G02390.1 143 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 187
                      8*******************************************9 PP
3Myb_DNA-binding24.27.7e-08329373346
                      SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46 
                      +W++eE +++ +a + l  +  +W+++a  ++ gR++ ++ +++ +
  OPUNC01G02390.1 329 KWSPEENKQFERALAGLDLRcpDWDRVALAIP-GRSALEVMNHFKD 373
                      8*****************99************.**********987 PP
4Myb_DNA-binding46.87e-15444488347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  OPUNC01G02390.1 444 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 488
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.2E-42576IPR001005SANT/Myb domain
SuperFamilySSF466892.54E-72881IPR009057Homeodomain-like
PfamPF002497.9E-72873IPR001005SANT/Myb domain
PROSITE profilePS500905.8772874IPR017877Myb-like domain
CDDcd001672.56E-62873No hitNo description
PROSITE profilePS5129418.359136192IPR017930Myb domain
SuperFamilySSF466891.94E-17137192IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-16139190IPR006447Myb domain, plants
SMARTSM007173.4E-13140190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-12140186IPR009057Homeodomain-like
CDDcd001674.06E-11143188No hitNo description
PfamPF002492.6E-12143187IPR001005SANT/Myb domain
SMARTSM007177.2E-4326377IPR001005SANT/Myb domain
PfamPF002497.9E-7329374IPR001005SANT/Myb domain
SuperFamilySSF466892.54E-7329382IPR009057Homeodomain-like
PROSITE profilePS500905.877329375IPR017877Myb-like domain
CDDcd001672.56E-6329374No hitNo description
PROSITE profilePS5129418.359437493IPR017930Myb domain
SuperFamilySSF466891.94E-17438493IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-16440491IPR006447Myb domain, plants
SMARTSM007173.4E-13441491IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-12441487IPR009057Homeodomain-like
PfamPF002492.6E-12444488IPR001005SANT/Myb domain
CDDcd001674.06E-11444489No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MMMRDVCMEV LPPMDHYASR GNWFMARKWS PEENKQFERA LAGLDLRCPD WDRVALAIPG  60
RSALEVMNHF KDLELDVQKI ENGMVPFPVY GAGGVGGGGA FTLQWDGGHG VGDFRNAYRF  120
GGGGGGKRHF GRTPEQERKK GVPWTEEEHK LFLLGLKKYG KGDWRNISRN FVQTRTPTQV  180
ASHAQKYFIR LNSGGKDKRR SSIHDITTVN LTDDRPPSPS QSSLISNQSN TSTLTAAVSP  240
FSSTTDVKPQ NAANASFNSP SRTLGMPGYG MGLQDQGLQC GGPLHDQLAA NRSIFFSEVD  300
EENSIHYVLL VLPPMDHYAS RGNWFMARKW SPEENKQFER ALAGLDLRCP DWDRVALAIP  360
GRSALEVMNH FKDLELDVQK IENGMVPFPV YGAGGVGGGG AFTLQWDGGH GVGDFRNAYR  420
FGGGGGGKRH FGRTPEQERK KGVPWTEEEH KLFLLGLKKY GKGDWRNISR NFVQTRTPTQ  480
VASHAQKYFI RLNSGGKDKR RSSIHDITTV NLTDDRPPSP SQSSLISNQS NTSTLTAAVS  540
PFSSTTDVKP QNAANASFNS PSRTLGMPGY GMGLQDQGLQ CGGPLHDQLA ANRSILF
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679640.0AK067964.1 Oryza sativa Japonica Group cDNA clone:J013124L02, full insert sequence.
GenBankEU8372500.0EU837250.1 Oryza sativa Japonica Group clone KCB707G04 myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621817.10.0transcription factor DIVARICATA
SwissprotQ8S9H79e-78DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0E0JDX00.0A0A0E0JDX0_ORYPU; Uncharacterized protein
STRINGOPUNC01G02390.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-58MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]